Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [RNA-seq]
RNA-seq (gene expression) · human · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE222945_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA924269. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 15 more — browse all 15 samples with per-sample file links →
- GSE223062 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [scRNA-Seq] 12 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage, rna-seq
- GSE222948 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation 69 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222946 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ATAC-seq] 22 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222947 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ChIP-seq] 20 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE255183 Disease-related AUTS2 disruption causes an imbalance of neuronal/glial lineage specification through the WNT/β-catenin pathway (RNA-Seq). 9 samples shares specification, lineage, rna-seq
- GSE273286 Fine-tuning ERK activity enables proliferation-differentiation balance during lineage specification of human embryonic stem cells 24 samples shares specification, activity, lineage
- GSE280704 Pioneering new enhancers by GATA3: role of facilitating transcription factors and chromatin remodeling [RNA-seq] 12 samples shares gata3, rna-seq
- GSE252288 Functional Genomics of Human Skeletal Development and the Patterning of Height Heritability [RNA-Seq] 69 samples shares patterning, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.