Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [scRNA-Seq]
Single-cell RNA-seq · human · 12 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE223062_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA924779. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE222945 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [RNA-seq] 15 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222948 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation 69 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222946 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ATAC-seq] 22 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222947 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ChIP-seq] 20 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE273286 Fine-tuning ERK activity enables proliferation-differentiation balance during lineage specification of human embryonic stem cells 24 samples shares specification, activity, lineage
- GSE288161 Single-cell exploration of gonadal somatic cell lineage specification during human sex determination 20 samples shares specification, lineage
- GSE242328 METTL7B is an essential epigenetic regulator of lineage specification in glioblastoma [RNAseq] 16 samples shares specification, lineage
- GSE319780 Base editing reveals an essential role for NANOG in human embryo lineage specification. 13 samples shares specification, lineage
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.