Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 22 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 22 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE222946_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA924270. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 22 more — browse all 22 samples with per-sample file links →
- GSE222947 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ChIP-seq] 20 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222948 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation 69 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE222945 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [RNA-seq] 15 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE223062 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [scRNA-Seq] 12 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage
- GSE273286 Fine-tuning ERK activity enables proliferation-differentiation balance during lineage specification of human embryonic stem cells 24 samples shares specification, activity, lineage
- GSE280565 Pioneering new enhancers by GATA3: role of facilitating transcription factors and chromatin remodeling [ATAC-seq] 48 samples shares gata3, atac-seq
- GSE252289 Functional Genomics of Human Skeletal Development and the Patterning of Height Heritability [ATAC-Seq] 89 samples shares patterning, atac-seq
- GSE292900 Fibroblast mechanoperception instructs pulmonary developmental and pattern specification gene expression programs [ATAC-seq] 56 samples shares specification, atac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.