Early activity of GATA3 mediates patterning and lineage specification in human gastrulation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 69 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 69 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE222948_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA924263. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 69 more — browse all 69 samples with per-sample file links →
- GSE222946 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ATAC-seq] 22 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage, early
- GSE222947 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [ChIP-seq] 20 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage, early
- GSE222945 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [RNA-seq] 15 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage, early
- GSE223062 Early activity of GATA3 mediates patterning and lineage specification in human gastrulation [scRNA-Seq] 12 samples shares gata3, specification, gastrulation, patterning, activity, mediates, lineage, early
- GSE273286 Fine-tuning ERK activity enables proliferation-differentiation balance during lineage specification of human embryonic stem cells 24 samples shares specification, activity, lineage
- GSE287170 Retinoic acid signaling activation in early intermediate mesoderm differentiation promotes dual lineage of intermediate mesoderm specification and enhances full-segment kidney organoid generation 2 samples shares specification, lineage, early
- GSE235928 Coactivator condensation drives lineage specification 14 samples shares specification, lineage
- GSE243132 METTL7B is an essential epigenetic regulator of lineage specification in glioblastoma 73 samples shares specification, lineage
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.