RNA sequencing of murine ovarian follicles +/- NTY
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Trigonelline activates NRF2 and awakens dormant ovarian follicles to promote pregnancy in aging miceiScience · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE230259_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA958142 and SRA study SRP433726. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE317288 Increased stiffness mimicking ovarian aging induces a fibroinflammatory response in follicles and impairs oocyte quality 32 samples shares follicles, ovarian
- GSE335098 Effect of Tyrphostin-AG4178 on ex-vivo mouse ovarian follicles in eIVFG ovulation system 17 samples shares follicles, ovarian
- GSE290574 Gene Regulatory Networks Orchestrating Oocyte Fate Bifurcation in Primordial Follicles Revealed by Single-Cell Transcriptomics 386 samples shares follicles
- GSE235021 Ovarian transcriptome sequencing (scRNA-seq and RNA-seq) of 6 and 9-month-old mice fed black rice, white brown rice and polished rice 41 samples shares ovarian
- GSE272450 Generation of germinal-vesicle oocytes from mouse embryonic stem cells under an ovarian soma-free condition (SC3-Seq) 156 samples shares ovarian
- GSE307881 Mouse Offspring Conceived by In Vitro Fertilization Exhibit Accelerated Reproductive Aging Through Early Ovarian Failure 151 samples shares ovarian
- GSE302064 Transcriptome analysis of the effect of RAD52 knockout on olaparib response in BRCA2-deficient, olaparib-resistant murine ovarian cancer cells (ID8-OR) 12 samples shares ovarian
- GSE250195 Overexpression of miR-200s in murine ovarian cancer cells (ID8 and 28-2) 12 samples shares ovarian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.