Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemia
RNA-seq (gene expression) · mouse · 61 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 61 samples: 60 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemiaProceedings of the National Academy of Sciences of the United States of America · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE233815_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA978030 and SRA study SRP440484. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 61 sample titles: 60 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7437165 MCAO_12h_A
- GSM7437166 MCAO_12h_B
- GSM7437167 MCAO_12h_C
- GSM7437168 MCAO_12h_D
- GSM7437169 MCAO_12h_E
- GSM7437170 MCAO_12h_SH_A
- GSM7437171 MCAO_12h_SH_B
- GSM7437172 MCAO_12h_SH_C
- GSM7437173 MCAO_12h_SH_D
- GSM7437174 MCAO_24h_A
- GSM7437175 MCAO_24h_B
- GSM7437176 MCAO_24h_C
- GSM7437177 MCAO_24h_D
- GSM7437178 MCAO_24h_SH_A
- GSM7437179 MCAO_24h_SH_B
- GSM7437180 MCAO_24h_SH_C
- GSM7437181 MCAO_24h_SH_D
- GSM7437182 MCAO_3D_A
- GSM7437183 MCAO_3D_B
- GSM7437184 MCAO_3D_C
- GSM7437185 MCAO_3D_D
- GSM7437186 MCAO_3D_E
- GSM7437187 MCAO_3D_SH_A
- GSM7437188 MCAO_3D_SH_B
- GSM7437189 MCAO_3D_SH_C
- GSM7437190 MCAO_3D_SH_D
- GSM7437191 MCAO_3h_A
- GSM7437192 MCAO_3h_B
- GSM7437193 MCAO_3h_C
- GSM7437194 MCAO_3h_D
- GSM7437195 MCAO_3h_E
- GSM7437196 MCAO_3h_SH_A
- GSM7437197 MCAO_3h_SH_B
- GSM7437198 MCAO_3h_SH_C
- GSM7437199 MCAO_3h_SH_D
- GSM7437200 MCAO_7D_A
- GSM7437201 MCAO_7D_B
- GSM7437202 MCAO_7D_C
- GSM7437203 MCAO_7D_D
- GSM7437204 MCAO_7D_E
+ 21 more — browse all 61 samples with per-sample file links →
- GSE233811 Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemia [bulk RNA-Seq] 48 samples shares spatiotemporal, ischemia, glial, acute, brain
- GSE314324 Transcriptomic responses to acute or chronic ethanol exposure observed across five brain regions in male mice 62 samples shares acute, brain
- GSE341480 Spatiotemporal Clonal Architecture of the Newborn Mouse Forebrain 186 samples shares spatiotemporal, brain
- GSE300113 Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Main dataset) 59 samples shares glial, brain
- GSE225948 Brain and blood single-cell transcriptomic analysis in acute and subacute phases after experimental stroke 29 samples shares acute, brain
- GSE225651 Brain changes in responses of mice to intracerebral hemorrhage at the acute stages 12 samples shares acute, brain
- GSE276647 Gene expression profile of microglia following traumatic brain injury and nasal anti-CD3 treatment at acute and chronic timepoints 54 samples shares acute, brain
- GSE290810 ALS/FTD-linked TBK1 deficiency in microglia induces an aged-like microglial signature and drives social recognition deficits [FACS_SpinalCord_Microglia & LPS_Brain_SpinalCord] 35 samples shares glial, brain
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.