Rosiglitazone and Trametinib to treat basal bladder tumors [RNA-Seq]
RNA-seq (gene expression) · mouse · 62 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 62 samples: 25 × TX vs 20 × CS vs 17 × CXGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Rosiglitazone and trametinib exhibit potent anti-tumor activity in a mouse model of muscle invasive bladder cancerNature communications · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE234326_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA980828 and SRA study SRP441414. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 62 samples.
How we read this: 3 replicated groups read from 62 sample titles; they account for 62 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7465122 CX019 CX
- GSM7465123 CX020 CX
- GSM7465124 CX021 CX
- GSM7465125 CX009 CX
- GSM7465126 CX010 CX
- GSM7465127 CX012 CX
- GSM7465128 CX016 CX
- GSM7465129 CX023 CX
- GSM7465130 CX024 CX
- GSM7465131 CX025 CX
- GSM7465132 CX056 CX
- GSM7465133 CX057 CX
- GSM7465134 CX059 CX
- GSM7465135 CX049 CX
- GSM7465136 CX050 CX
- GSM7465137 CX052 CX
- GSM7465138 CX053 CX
- GSM7465139 TX1 TX
- GSM7465140 TX2 TX
- GSM7465141 TX3 TX
- GSM7465142 TX17 TX
- GSM7465143 TX18 TX
- GSM7465144 TX19 TX
- GSM7465145 TX4 TX
- GSM7465146 TX5 TX
- GSM7465147 TX6 TX
- GSM7465148 TX7 TX
- GSM7465149 TX8 TX
- GSM7465150 TX9 TX
- GSM7465151 TX12 TX
- GSM7465152 TX20 TX
- GSM7465153 TX21 TX
- GSM7465154 TX22 TX
- GSM7465155 TX23 TX
- GSM7465156 TX13 TX
- GSM7465157 TX14 TX
- GSM7465158 TX15 TX
- GSM7465159 TX16 TX
- GSM7465160 TX29 TX
- GSM7465161 TX30 TX
+ 22 more — browse all 62 samples with per-sample file links →
- GSE271662 RNA-seq of Mouse Spinal Cord after Lateral Compression Spinal Cord Injury followed by Delayed Atorvastatin or Vehicle Treatment [Bulk RNA-seq of mice spinal cords] 16 samples shares rna-seq, treat
- GSE328496 Gene expression + ATAC profiling of trisomic hippocampal neurons upon SAHA treatment [RNA-seq] 16 samples shares rna-seq, treat
- GSE283700 RNA-sequencing of SVF-derived preadipocytes from inguinal adipose tissue of male mice differentiating under control conditions or treated with CGRP 15 samples shares rna-seq, treat
- GSE327205 RNA-seq analysis of dorsal root ganglia (DRG) from MIA-induced osteoarthritis mice with acupuncture or no treatment: Focus on neuro-immune crosstalk genes 8 samples shares rna-seq, treat
- GSE308939 Single-cell RNA-seq reveals the keratinocyte heterogeneity and increased interfollicular basal keratinocytes in wound-induced hair follicle neogenesis 6 samples shares rna-seq, basal
- GSE262879 Single-cell RNA-sequencing of murine pancreatic tumors derived from the orthotopic transplantation of Smad4 wild-type (WT) or Smad4 knockout (KO) pancreatic ductal adenocarcinoma (PDAC) KPC organoids in nu/nu mice. 18 samples shares rna-seq
- GSE264105 Plate-based scRNA-seq of plasma-positive microglia and plasma-negative microglia in young mice 1111 samples shares rna-seq
- GSE326100 scRNA-seq of mouse cochlea organoid cells 768 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.