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FCRL3 is an immunoregulatory receptor that restrains the activation of human memory T lymphocytes

GSE241004 Homo sapiens (human) RNA-seq (gene expression) 30 samples Submitted 2025/08/16 Platform GPL24676
At a glance

RNA-seq (gene expression) · human · 30 samples

What it is
RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
Organism
Homo sapiens (human)
Samples
30 samples
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Paper
FCRL3 is an immunoregulatory receptor that restrains the activation of human memory T lymphocytesThe Journal of experimental medicine · 2026
Summary (written by the submitters)
To characterize the FcRL3+ T cell subset in memory helper CD4+, CD8+, and CD4+ regulatory lymphocytes, we performed RNA-sequencing analysis using T cells, separated by the expression of FcRL3, from the peripheral blood of 5 healthy donors, stimulated for 3h with PMA and ionomycin to induce cytokine expression.
Published in
FCRL3 is an immunoregulatory receptor that restrains the activation of human memory T lymphocytes
Bianchi N, Foli E, Mostanfar M et al. · The Journal of experimental medicine 2026 · PMID 41091129 · doi:10.1084/jem.20242474
This dataset
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE241004_RAW.tar (it can run to tens of gigabytes).

3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA1006024 and SRA study SRP455403. Searching any of these in the dataset finder brings you back here.

Samples in this study

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