EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (ChIP-seq)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 22 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 22 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ETS1, a Target Gene of the EWSR1::FLI1 Fusion Oncoprotein, Regulates the Expression of the Focal Adhesion Protein TENSIN3Molecular cancer research : MCR · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243171_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1016476 and SRA study SRP460356. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 22 more — browse all 22 samples with per-sample file links →
- GSE243277 EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (CUT&RUN) 14 samples shares ewsr1, fli1, ets1, oncoproteins, fusion
- GSE243183 EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (RNA-seq) 18 samples shares ewsr1, fli1, ets1, oncoproteins, fusion
- GSE243279 EWSR1::FLI1 fusion oncoproteins’ regulation of ETS1 (RNA-seq) 9 samples shares ewsr1, fli1, ets1, oncoproteins, fusion
- GSE243184 ETS1, a target gene of the EWSR1::FLI1 fusion oncoprotein, regulates the expression of the focal adhesion protein TENSIN3 63 samples shares ewsr1, fli1, ets1, fusion
- GSE290894 Rewiring the fusion oncoprotein EWSR1::FLI1 in Ewing scarcoma with bivalent small molecules [ChIP-Seq] 24 samples shares ewsr1, fli1, chip-seq, fusion
- GSE290893 Rewiring the fusion oncoprotein EWSR1::FLI1 in Ewing scarcoma with bivalent small molecules [ATAC-seq] 4 samples shares ewsr1, fli1, fusion
- GSE290895 Rewiring the fusion oncoprotein EWSR1::FLI1 in Ewing scarcoma with bivalent small molecules [RNA-Seq] 54 samples shares ewsr1, fli1, fusion
- GSE270570 Endogenous degron alleles enable tunable control of EWSR1-FLI1 oncoprotein expression 7 samples shares ewsr1, fli1
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.