← BioTransfer GEO Dataset Finder
GEO series

B cells transition through a T cell dependent plastic state during the adaptive immune response

GSE249081 Mus musculus Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 samples Submitted 2025/10/29 Platform GPL24247
Summary
During the adaptive immune response, fully mature germinal center (GC) B cells manifest the unique capacity to undergo rapid multidirectional, and dramatic phenotypic shifts and evolve into diverse memory and antibody secreting cells. No other mature cell lineages are known to display such extensive phenotypic plasticity under physiological conditions. Whether this represents a form of differentiation or re-acquisition of stem-like plasticity remain unknown. Herein, we show that GC B cells undergo a transient gain of functional plasticity, which is unprecedented under physiological conditions. Strikingly, this process, which we call “anaplasis”, was spatially and temporally restricted to GC B cells receiving T cell help. Anaplasis involved partial silencing of the B cell program, the reactivation of embryonic stem cell super-enhancers and genes and was dependent on specific transcription factors. Notably, lymphoma mutations that enhance T cell help, further increased GC stem-like functionality, whereas mutations inducing chromatin plasticity bypassed the T cell requirement. Moreover, anaplasis signatures were associated with unfavorable outcome in Diffuse Large B cell lymphoma. Altogether, our findings document that differentiated cells can re-acquire stem-like plasticity under physiological conditions. This potentially harmful phenotype co-evolved with strict non-cell autonomous checkpoints linked to immunological selection processes. GC anaplasis may help to explain why most lymphoid malignancies arise from mature GC B cells and is potentially hijacked, leading to aggressive diseases and highly fit lymphomas.
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE249081_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1047128 and SRA study SRP475170. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 4 more — browse all 4 samples with per-sample file links →

Similar datasets

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.