Long-term haplodeficency of DSPP causes temporomandibular joint osteoarthritis in mice
RNA-seq (gene expression) · mouse · 3 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Long-term haplodeficency of DSPP causes temporomandibular joint osteoarthritis in miceBMC oral health · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE261528_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1087388 and SRA study SRP495092. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE276978 LOXL2 protects temporomandibular joint from mitochondrial dysfunction, apoptosis and osteoarthritis like progression 20 samples shares temporomandibular, osteoarthritis, joint
- GSE276088 Single-cell transcriptomic and spatial subcellular landscape of the articular disk synovium in mouse temporomandibular joint osteoarthritis 18 samples shares temporomandibular, osteoarthritis, joint
- GSE303194 Nano MiRNA-Functionating Tetrahedral Framework Nucleic Acid for Cartilage-targeted Ferritinophagy Modulation to Attenuate Temporomandibular Joint Osteoarthritis 15 samples shares temporomandibular, osteoarthritis, joint
- GSE285011 TPPU alleviate cartilage degradation in temporomandibular joint osteoarthritis by inhibiting M1 macrophage polarization through the EETs/IL-17/NF-KB signaling pathway 6 samples shares temporomandibular, osteoarthritis, joint
- GSE338438 RalA-driven CCN3 secretion amplifies inflammatory catabolism to promote temporomandibular joint osteoarthritis 6 samples shares temporomandibular, osteoarthritis, joint
- GSE276131 Single-cell transcriptomic and spatial subcellular landscape of the articular disk synovium in mouse temporomandibular joint osteoarthritis 3 samples shares temporomandibular, osteoarthritis, joint
- GSE267942 Mapping cell diversity and position in temporomandibular joint osteoarthritis with pain at single cell resolution 2 samples shares temporomandibular, osteoarthritis, joint
- GSE295404 Lymphatic dysfunction drives inflammatory temporomandibular joint osteoarthritis (TMJOA) and pain 2 samples shares temporomandibular, osteoarthritis, joint
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.