mRNA-seq of phalanges at stages E16 and E17 of the mouse
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Proximal phalanges of digit 1 have different identities in the forelimbs and hindlimbs of the mouseScientific reports · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE264526_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1103076 and SRA study SRP503251. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8219522 Distal phalange of forelimb digit 1, embryos at E16, a pool of 20 individuals
- GSM8219523 Proximal phalange of forelimb digit 1, embryos at E16, a pool of 20 individuals
- GSM8219524 Distal phalange of forelimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219525 Middle phalange of forelimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219526 Proximal phalange of forelimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219527 Distal phalange of hindlimb digit 1, embryos at E16, a pool of 20 individuals
- GSM8219528 Proximal phalange of hindlimb digit 1, embryos at E16, a pool of 20 individuals
- GSM8219529 Distal phalange of hindlimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219530 Middle phalange of hindlimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219531 Proximal phalange of hindlimb digit 2, embryos at E16, a pool of 20 individuals
- GSM8219532 Distal phalange of forelimb digit 1, embryos at E17, a pool of 10 individuals
- GSM8219533 Proximal phalange of forelimb digit 1, embryos at E17, a pool of 10 individuals
- GSM8219534 Distal phalange of forelimb digit 2, embryos at E17, a pool of 10 individuals
- GSM8219535 Middle phalange of forelimb digit 2, embryos at E17, a pool of 10 individuals
- GSM8219536 Proximal phalange of forelimb digit 2, embryos at E17, a pool of 10 individuals
- GSM8219537 Distal phalange of hindlimb digit 1, embryos at E17, a pool of 10 individuals
- GSM8219538 Proximal phalange of hindlimb digit 1, embryos at E17, a pool of 10 individuals
- GSM8219539 Distal phalange of hindlimb digit 2, embryos at E17, a pool of 10 individuals
- GSM8219540 Middle phalange of hindlimb digit 2, embryos at E17, a pool of 10 individuals
- GSM8219541 Proximal phalange of hindlimb digit 2, embryos at E17, a pool of 10 individuals
- GSE52583 High throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult) 201 samples shares e16, stages
- GSE319684 Timecourse of FACS sorted Ly6C+ monocytes, tissue resident alveolar macrophages (trAMs), monocyte derived alveolar macrophages (bmAMs) and epithelial cells from SARS-CoV-2 (maVie16) vs. IAV (PR8) infected mouse lungs 176 samples shares e16
- GSE214849 Gene expression screening using E17.5 mouse nasomaxillary tissue 6 samples shares e17
- GSE271016 Gene expression profile at single cell level of SST expressing neurons from E16.5, P1 and P5 mouse neocortex 4 samples shares e16
- GSE291845 Transcriptional alterations in the brain following Dot1l conditional knockout using the Emx1-Cre mouse line at embryonic day 16.5 [EmxDotRNAE16] 2 samples shares e16
- GSE271947 Gene expression profile at single cell level of SST expressing neurons from E16.5, P1 and P5 mouse neocortex [2] 2 samples shares e16
- GSE304794 RNA sequeqncing data of Kat6a–/–, Kat6a+/– and Kat6a+/+ E12.5 dorsal telencephalon and of Kat6a+/– and Kat6a+/+ E16.5 cortical neurons 20 samples shares e16
- GSE315700 Gene expression profile at single cell level of SST expressing neurons from E16.5, P1 and P5 mouse neocortex [scRNA-seq E16.5] 1 samples shares e16
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.