Gene expression profile at single cell level of SST expressing neurons from E16.5, P1 and P5 mouse neocortex [scRNA-seq E16.5]
Single-cell RNA-seq · mouse · 1 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE315700_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1398812 and SRA study SRP660003. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE280985 An immunobiliary single-cell atlas resolves crosstalk between type 2 conventional dendritic cells and γδ T cells in cholangitis [scRNA-seq] 14 samples shares sst, scrna-seq
- GSE282783 Delayed crosstalk between astrocytes and neurons leads to depressive-like behaviors 12 samples shares sst, neurons
- GSE275643 Single cell RNA-seq reveals GINIP-Expressing neurons as the main targets of focused ultrasoud. 57 samples shares expressing, neurons
- GSE243169 Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume 38 samples shares expressing, neurons
- GSE232496 Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume (RNA-Seq) 30 samples shares expressing, neurons
- GSE284096 Targeted Apoptosis of the Angiotensin AT1R (Agtr1a)-Expressing Subtype of Agouti-Related Peptide Neurons in Adult Mice Increases Food Intake and Resting Metabolism, and Alters Blood Pressure Control 24 samples shares expressing, neurons
- GSE281444 Definitive Evidence for the Identification and Function of Renin-Expressing Cholinergic Neurons in the Nucleus Ambiguus 21 samples shares expressing, neurons
- GSE286541 Myelin antigen capture in the CNS by B cells expressing EBV latent membrane protein 1 leads to demyelinating lesion formation [scRNA-Seq] 14 samples shares expressing, scrna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.