Neurodevelopmental origins of structural and psychomotor defects in CXCR4-linked primary immunodeficiency
Single-cell RNA-seq · mouse · 2 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Neurodevelopmental origins of structural and psychomotor defects in CXCR4-linked primary immunodeficiencyNeuron · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE266671_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1108246 and SRA study SRP505922. Searching any of these in the dataset finder brings you back here.
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+ 2 more — browse all 2 samples with per-sample file links →
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- GSE283523 Title: Neurodevelopmental and behavioral defects in congenital heart disease 8 samples shares neurodevelopmental, defects
- GSE283526 Neurodevelopmental and behavioral defects in congenital heart disease [EMX-cre RNAseq] 6 samples shares neurodevelopmental, defects
- GSE263334 Duplication of autism-related gene Chd8 leads to behavioral hyperactivity and neurodevelopmental defects in mice 40 samples shares neurodevelopmental, defects
- GSE299956 MeCP2 gene dosage-dependent neurodevelopmentally restricted defects arise by SWI/SNF-mediated aberrant activation of cell fate-determining bivalent genes [Cut & Tag] 16 samples shares neurodevelopmental, defects
- GSE283524 Neurodevelopmental and behavioral defects in congenital heart disease [ChIP-seq] 2 samples shares neurodevelopmental, defects
- GSE317803 Mild SARS-CoV-2 maternal infection in mice induces transient offspring neurodevelopmental aberrance 140 samples shares neurodevelopmental
- GSE297245 Prenatal and postnatal effects of gestational immune activation on synaptic and neurodevelopmental pathways via epigenetic mechanisms (RNA-seq) 84 samples shares neurodevelopmental
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.