Xap5 protects against necrotic apoptosis induced by overdevelopment in adipocytes.
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × WAT, WT, D42, vs 3 × WAT, cKO, D42, vs 3 × Adipocyte, WT, D8, vs 3 × Adipocyte, KO, D8,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267815_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1113175 and SRA study SRP508512. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8279217 WAT, WT, D42, rep1 WAT, WT, D42,
- GSM8279218 WAT, WT, D42, rep2 WAT, WT, D42,
- GSM8279219 WAT, WT, D42, rep3 WAT, WT, D42,
- GSM8279220 WAT, cKO, D42, rep1 WAT, cKO, D42,
- GSM8279221 WAT, cKO, D42, rep2 WAT, cKO, D42,
- GSM8279222 WAT, cKO, D42, rep3 WAT, cKO, D42,
- GSM8279223 Adipocyte, WT, D8, rep1 Adipocyte, WT, D8,
- GSM8279224 Adipocyte, WT, D8, rep2 Adipocyte, WT, D8,
- GSM8279225 Adipocyte, WT, D8, rep3 Adipocyte, WT, D8,
- GSM8279226 Adipocyte, KO, D8, rep1 Adipocyte, KO, D8,
- GSM8279227 Adipocyte, KO, D8, rep2 Adipocyte, KO, D8,
- GSM8279228 Adipocyte, KO, D8, rep3 Adipocyte, KO, D8,
- GSE341145 7-hydroxycoumarin-β-D-glucuronide protects against cisplatin-induced acute kidney injury via inhibiting p38 MAPK-mediated apoptosis in mice 20 samples shares apoptosis, protects, against, induced
- GSE341199 Hepatocyte RIPK1 scaffolding function protects against alcohol-induced liver injury by restraining ER stress-driven apoptosis and inflammation 8 samples shares apoptosis, protects, against, induced
- GSE271317 Deletion of Bmal1 in Intestinal Epithelium Protects against Colonic Inflammation by Suppressing the Apoptosis Pathway 12 samples shares apoptosis, protects, against
- GSE232928 Transcriptional profiling of mature murine adipocytes of the inguinal white adipose tissue depot following LPCAT3 deletion and HFD-induced adipose hypertrophy. 24 samples shares adipocytes, induced
- GSE303462 Bcl-xL inhibition potentiates interferon-induced apoptosis in MPN stem cells 24 samples shares apoptosis, induced
- GSE276978 LOXL2 protects temporomandibular joint from mitochondrial dysfunction, apoptosis and osteoarthritis like progression 20 samples shares apoptosis, protects
- GSE308218 Protective effects of swimming exercises on murine tumor-induced cardiac inflammation and apoptosis by suppressing PI3K-AKT pathway 17 samples shares apoptosis, induced
- GSE299229 PUMA-induced apoptosis in telomere biology disorders 15 samples shares apoptosis, induced
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.