Graphene-polymer nanofibers enable optically induced electrical maturation in stem cell-derived cardiomyocytes and brain organoids
RNA-seq (gene expression) · human · 23 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 23 samples: 23 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268981_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1119548 and SRA study SRP511469. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 23 sample titles: 23 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8304032 B33, H9, 0.01%rGO, Light-Trained
- GSM8304033 B33, H9, 0.01%rGO, Unstimulated
- GSM8304034 B33, H9, 0.1%rGO, Light-Trained
- GSM8304035 B33, H9, 0.1%rGO, Unstimulated
- GSM8304036 B33, H9, 0%rGO, Light-Trained
- GSM8304037 B33, H9, 0%rGO, Unstimulated
- GSM8304038 B38, H9, 0.01%rGO, Unstimulated
- GSM8304039 B38, H9, 0.1%rGO, Light-Trained
- GSM8304040 B38, H9, 0.1%rGO, Unstimulated
- GSM8304041 B38, H9, 0%rGO, Unstimulated
- GSM8304042 B39, WT83, 0.01%rGO, Unstimulated
- GSM8304043 B39, WT83, 0.1%rGO, Unstimulated
- GSM8304044 BM1, H9, 0.01%rGO, Light-Trained
- GSM8304045 BM1, H9, 0.01%rGO, Unstimulated
- GSM8304046 BM1, H9, 0.1%rGO, Unstimulated
- GSM8304047 BM1, H9, 0%rGO, Light-Trained
- GSM8304048 BM1, H9, 0%rGO, Unstimulated
- GSM8304049 BM2, WT83, 0.01%rGO, Light-Trained
- GSM8304050 BM2, WT83, 0.01%rGO, Unstimulated
- GSM8304051 BM2, WT83, 0.1%rGO, Light-Trained
- GSM8304052 BM2, WT83, 0.1%rGO, Unstimulated
- GSM8304053 BM2, WT83, 0%rGO, Light-Trained
- GSM8304054 BM2, WT83, 0%rGO, Unstimulated
- GSE249826 Human-induced pluripotent Stem Cell-Derived Hepatic Stellate Cells in Liver Organoids: Maturation Promotion and Essential Role in Vascularization 26 samples shares cell-derived, maturation, organoids
- GSE336395 Multi-omic analysis reveals maturation programs in human pluripotent stem cell-derived cardiomyocytes during long-term culture 11 samples shares cardiomyocytes, cell-derived, maturation
- GSE262419 Informing Hazard Identification and Risk Characterization of Environmental Chemicals by Combining Transcriptomic and Functional Data from Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes 4558 samples shares cardiomyocytes, cell-derived
- GSE270220 Limitations in mitochondrial programming restrain the maturation of human stem cell-derived β cells 81 samples shares cell-derived, maturation
- GSE283776 Human stem cell-derived GABAergic interneuron development reveals early emergence of subtype diversity followed by gradual electrochemical maturation [snRNA-seq] 19 samples shares cell-derived, maturation
- GSE293391 Healthy human induced pluripotent stem cell-derived cardiomyocytes exhibit sex dimorphism even without the addition of hormones 18 samples shares cardiomyocytes, cell-derived
- GSE332763 Studying the effect of sarcomeric MYH7R663H and non-sarcomeric BRAFT599R hypertrophic cardimyopathy mutations in human induced pluripotent stemm cell-derived cardiomyocytes 15 samples shares cardiomyocytes, cell-derived
- GSE283775 Human stem cell-derived GABAergic interneuron development reveals early emergence of subtype diversity followed by gradual electrochemical maturation [scRNA-seq] 14 samples shares cell-derived, maturation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.