Species-specific progenitor domain extends neurogenesis and increases motor neuron production
RNA-seq (gene expression) · mouse · 3 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A human-specific progenitor sub-domain extends neurogenesis and increases motor neuron productionNature neuroscience · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE270069_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1124941. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE217638 Effect of ZIC1 on group 3 medulloblastoma cell lines and granule neuron progenitor [ChIP-seq] 13 samples shares progenitor, neuron
- GSE65000 Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion 36 samples shares progenitor
- GSE247409 DDX41 heterozygosity impairs hematopoietic progenitor cell fitness and cooperates with p53 mutation to drive malignancy 26 samples shares progenitor
- GSE245373 Mice are not men: scRNA-sequencing of the human atherosclerotic plaque identifies species-specific immune cell phenotypes that associate with clinical disease 11 samples shares species-specific
- GSE262910 Optimization of in vitro production of human satellite cells for skeletal muscle cell therapy 5 samples shares production
- GSE260779 Spatial transcriptomic sequencing of repaired lung transplanted with human P63+ progenitor [STOmics-seq] 1 samples shares progenitor
- GSE267145 The transcription factor ZNF469 regulates collagen production in liver fibrosis 508 samples shares production
- GSE240030 ATRX guards against aberrant differentiation in mesenchymal progenitor cells 165 samples shares progenitor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.