ATRX guards against aberrant differentiation in mesenchymal progenitor cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 165 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 165 samples: 36 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ATRX guards against aberrant differentiation in mesenchymal progenitor cellsNucleic acids research · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240030_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1001941 and SRA study SRP453235. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 111 samples.
How we read this: 36 replicated groups read from 165 sample titles; they account for 111 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7680089 sg5_G7_R1 sg5_G7
- GSM7680090 sg5_G7_R2 sg5_G7
- GSM7680091 sg5_G7_R3 sg5_G7
- GSM7680092 sg6_B10_R1 sg6_B10
- GSM7680093 sg6_B10_R2 sg6_B10
- GSM7680094 sg6_B10_R3 sg6_B10
- GSM7680095 WT_R1 WT
- GSM7680096 WT_R2 WT
- GSM7680097 WT_R3 WT
- GSM7680098 B10_rRNAdeplete_1 B10_rRNAdeplete
- GSM7680099 B10_rRNAdeplete_2 B10_rRNAdeplete
- GSM7680100 B10_rRNAdeplete_3 B10_rRNAdeplete
- GSM7680101 G7_rRNAdeplete_1 G7_rRNAdeplete
- GSM7680102 G7_rRNAdeplete_2 G7_rRNAdeplete
- GSM7680103 G7_rRNAdeplete_3 G7_rRNAdeplete
- GSM7680104 WT_rRNAdeplete_1 WT_rRNAdeplete
- GSM7680105 WT_rRNAdeplete_2 WT_rRNAdeplete
- GSM7680106 WT_rRNAdeplete_3 WT_rRNAdeplete
- GSM7680107 B10_K27me3_R1 B10_K27me3
- GSM7680108 B10_K27me3_R2 B10_K27me3
- GSM7680109 B10_K27me3_R3 B10_K27me3
- GSM7680110 G7_K27me3_R1 G7_K27me3
- GSM7680111 G7_K27me3_R2 G7_K27me3
- GSM7680112 G7_K27me3_R3 G7_K27me3
- GSM7680113 WT_K27me3_R1 WT_K27me3
- GSM7680114 WT_K27me3_R2 WT_K27me3
- GSM7680115 WT_K27me3_R3 WT_K27me3
- GSM7680116 B10_K27ac_R1 B10_K27ac
- GSM7680117 B10_K27ac_R2 B10_K27ac
- GSM7680118 B10_K27ac_R3 B10_K27ac
- GSM7680119 G7_K27ac_R1 G7_K27ac
- GSM7680120 G7_K27ac_R2 G7_K27ac
- GSM7680121 G7_K27ac_R3 G7_K27ac
- GSM7680122 WT_K27ac_R1 WT_K27ac
- GSM7680123 WT_K27ac_R2 WT_K27ac
- GSM7680124 WT_K27ac_R3 WT_K27ac
- GSM7680125 B10_K9me3_R1 B10_K9me3
- GSM7680126 B10_K9me3_R2 B10_K9me3
- GSM7680127 B10_K9me3_R3 B10_K9me3
- GSM7680128 G7_K9me3_R1 G7_K9me3
+ 125 more — browse all 165 samples with per-sample file links →
- GSE270148 Myeloid progenitor dysregulation fuels immunosuppressive macrophages in tumours 85 samples shares progenitor
- GSE296761 Elucidating the impact of chemotherapy on skeletal progenitors 43 samples shares progenitor
- GSE284443 L1CAM generates SOX2+ metastatic progenitors through planar cell polarity signaling in lung adenocarcinoma 6 samples shares progenitor
- GSE100041 Reduced representation bisulfite-sequencing of human leukemia cells and mouse hematopoietic progenitors 34 samples shares progenitor
- GSE280817 Inflammation awakens dormant cancer cells by modulating epithelial-mesenchymal phenotypic state 20 samples shares mesenchymal
- GSE20281 The transcriptional network for mesenchymal transformation of brain tumours 108 samples shares mesenchymal
- GSE278354 Aberrant splicing in Huntington’s disease accompanies disrupted TDP-43 activity and altered m6A RNA modifications 60 samples shares aberrant
- GSE65000 Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion 36 samples shares progenitor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.