Molecular states underlying neuronal cell type development and plasticity in the whisker cortex
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 4 × P22_S vs 4 × P22_D vs 2 × P12_A vs 2 × P22_CGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Molecular states underlying neuronal cell type development and plasticity in the whisker cortexbioRxiv : the preprint server for biology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276528_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1157766 and SRA study SRP531056. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8500368 P12_A1 P12_A
- GSM8500369 P12_A2 P12_A
- GSM8500370 P22_S1 P22_S
- GSM8500371 P22_S2 P22_S
- GSM8500372 P22_S3 P22_S
- GSM8500373 P22_S4 P22_S
- GSM8500374 P22_D1 P22_D
- GSM8500375 P22_D2 P22_D
- GSM8500376 P22_D3 P22_D
- GSM8500377 P22_D4 P22_D
- GSM8500378 P22_C1 P22_C
- GSM8500379 P22_C2 P22_C
- GSE306262 Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [RNA-seq] 40 samples shares plasticity, neuronal
- GSE272496 Transcriptome signatures of the medial prefrontal cortex underlying GABAergic control of resilience to chronic stress exposure 38 samples shares underlying, cortex
- GSE336483 Stress-Coping Phenotypes Shape Adipose Tissue Function and Plasticity and Modulate Metabolic Resilience 36 samples shares plasticity, type
- GSE243489 Single-nucleus RNA-seq identifies one galanin neuronal subtype in mouse preoptic hypothalamus activated during recovery sleep after sleep deprivation 19 samples shares neuronal, type
- GSE263415 Spatial hepatocyte plasticity of gluconeogenic gene expression and gluconeogenic activity during the metabolic transitions between fed, fasted and starvation states [RNA-Seq] 18 samples shares plasticity, states
- GSE276730 The histone lysine demethylase KDM7A contributes to reward memory via Fscn1-induced synaptic plasticity in the medial prefrontal cortex 16 samples shares plasticity, cortex
- GSE313497 Cell-specific effects of acute sleep deprivation on transcriptomic signatures of non-neuronal cells in the mouse hippocampus and prefrontal cortex 11 samples shares neuronal, cortex
- GSE327851 Transneuronal cytokine delivery promotes functional recovery across spinal cord contusion severities via descending circuit plasticity 9 samples shares plasticity, neuronal
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.