Idenitifying RIPK3 dependent genes in neurons expressing RIPK3-activatable system
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- RIPK3 coordinates RHIM domain-dependent antiviral inflammatory transcription in neuronsScience signaling · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280962_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1181549 and SRA study SRP542841. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE281061 Assessing RIPK3 dependent genes in death-resistant and death-susceptible MEFs encoding activatable RIPK3-system 39 samples shares ripk3, dependent, system
- GSE280963 Comparison of transcriptional response in ZIKV-infected wildtype (B6J) and RIPK3 KO neurons 12 samples shares ripk3, neurons
- GSE305184 Dissection of kinase-dependent and independent functions of RIPK3 in inflammatory disease 12 samples shares ripk3, dependent
- GSE80740 Investigation of ripk3-dependent IAV-induced genes 24 samples shares ripk3, dependent
- GSE268241 HPV16-expressing tumors release multiple IL-1 ligands to orchestrate systemic immunosuppression whose disruption enables efficacy of a therapeutic vaccine. 63 samples shares expressing, system
- GSE275643 Single cell RNA-seq reveals GINIP-Expressing neurons as the main targets of focused ultrasoud. 57 samples shares expressing, neurons
- GSE243169 Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume 38 samples shares expressing, neurons
- GSE232496 Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume (RNA-Seq) 30 samples shares expressing, neurons
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.