Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume
RNA-seq (gene expression) · mouse · 38 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 38 samples: 6 conditions, mostly with about 5 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243169_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1016470 and SRA study SRP437592. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 30 samples.
How we read this: 6 replicated groups read from 38 sample titles; they account for 30 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7346220 wt_Thoracic_rep1 wt_Thoracic
- GSM7346221 wt_Thoracic_rep2 wt_Thoracic
- GSM7346222 wt_Thoracic_rep3 wt_Thoracic
- GSM7346223 wt_Thoracic_rep4 wt_Thoracic
- GSM7346224 wt_Thoracic_rep5 wt_Thoracic
- GSM7346225 ko_Thoracic_rep1 ko_Thoracic
- GSM7346226 ko_Thoracic_rep2 ko_Thoracic
- GSM7346227 ko_Thoracic_rep3 ko_Thoracic
- GSM7346228 ko_Thoracic_rep4 ko_Thoracic
- GSM7346229 ko_Thoracic_rep5 ko_Thoracic
- GSM7346230 wt_Lumbar_rep1 wt_Lumbar
- GSM7346231 wt_Lumbar_rep2 wt_Lumbar
- GSM7346232 wt_Lumbar_rep3 wt_Lumbar
- GSM7346233 wt_Lumbar_rep4 wt_Lumbar
- GSM7346234 wt_Lumbar_rep5 wt_Lumbar
- GSM7346235 ko_Lumbar_rep1 ko_Lumbar
- GSM7346236 ko_Lumbar_rep2 ko_Lumbar
- GSM7346237 ko_Lumbar_rep3 ko_Lumbar
- GSM7346238 ko_Lumbar_rep4 ko_Lumbar
- GSM7346239 ko_Lumbar_rep5 ko_Lumbar
- GSM7346240 wt_Nodose_rep1 wt_Nodose
- GSM7346241 wt_Nodose_rep2 wt_Nodose
- GSM7346242 wt_Nodose_rep3 wt_Nodose
- GSM7346243 wt_Nodose_rep4 wt_Nodose
- GSM7346244 wt_Nodose_rep5 wt_Nodose
- GSM7346245 ko_Nodose_rep1 ko_Nodose
- GSM7346246 ko_Nodose_rep2 ko_Nodose
- GSM7346247 ko_Nodose_rep3 ko_Nodose
- GSM7346248 ko_Nodose_rep4 ko_Nodose
- GSM7346249 ko_Nodose_rep5 ko_Nodose
- GSM7715052 SAM24380129_VG_WT_1
- GSM7715053 SAM24380130_VG_WT_2
- GSM7715054 SAM24380131_VG_WT_3
- GSM7715055 SAM24380132_VG_WT_4
- GSM7715056 SAM24380133_VG_KO_1
- GSM7715057 SAM24380134_VG_KO_2
- GSM7715058 SAM24380135_VG_KO_3
- GSM7715059 SAM24380136_VG_KO_4
- GSE232496 Lung-innervating neurons expressing TMC3 control broncho-constriction and dilation with direct impact on lung tidal volume (RNA-Seq) 30 samples shares tmc3, broncho-constriction, lung-innervating, expressing, dilation, neurons, control, direct
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- GSE276009 Comparative Single Cell Transcriptome Analysis of c-Met Receptor Expressing and Non-Expressing Projection Neurons in the Developing Frontal and Visual Cortices 12 samples shares expressing, neurons
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.