Humanized Monoacylglycerol Acyltransferase 2 mice Become Obese and develop Metabolic Dysfunction-Associated Steatotic Liver Disease when fed a High Fat Diet
RNA-seq (gene expression) · mouse · 64 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 64 samples: 16 × Group 1 WT mice fed a HFD. RNASeq performed at end of study # vs 16 × Group 2 WT mice fed chow. RNASeq performed at end of the study # vs 16 × Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study # vs 16 × Group 4 Humanized Mgat2 mice fed chow. RNASeq performed at the end of the study #Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE283060_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1191515 and SRA study SRP548102. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 64 samples.
How we read this: 4 replicated groups read from 64 sample titles; they account for 64 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8655216 Group 1 WT mice fed a HFD. RNASeq performed at end of study #1 Group 1 WT mice fed a H…
- GSM8655217 Group 1 WT mice fed a HFD. RNASeq performed at end of study #2 Group 1 WT mice fed a H…
- GSM8655218 Group 1 WT mice fed a HFD. RNASeq performed at end of study #3 Group 1 WT mice fed a H…
- GSM8655219 Group 1 WT mice fed a HFD. RNASeq performed at end of study #4 Group 1 WT mice fed a H…
- GSM8655220 Group 1 WT mice fed a HFD. RNASeq performed at end of study #5 Group 1 WT mice fed a H…
- GSM8655221 Group 1 WT mice fed a HFD. RNASeq performed at end of study #6 Group 1 WT mice fed a H…
- GSM8655222 Group 1 WT mice fed a HFD. RNASeq performed at end of study #7 Group 1 WT mice fed a H…
- GSM8655223 Group 1 WT mice fed a HFD. RNASeq performed at end of study #8 Group 1 WT mice fed a H…
- GSM8655224 Group 1 WT mice fed a HFD. RNASeq performed at end of study #9 Group 1 WT mice fed a H…
- GSM8655225 Group 1 WT mice fed a HFD. RNASeq performed at end of study #10 Group 1 WT mice fed a H…
- GSM8655226 Group 1 WT mice fed a HFD. RNASeq performed at end of study #11 Group 1 WT mice fed a H…
- GSM8655227 Group 1 WT mice fed a HFD. RNASeq performed at end of study #12 Group 1 WT mice fed a H…
- GSM8655228 Group 1 WT mice fed a HFD. RNASeq performed at end of study #13 Group 1 WT mice fed a H…
- GSM8655229 Group 1 WT mice fed a HFD. RNASeq performed at end of study #14 Group 1 WT mice fed a H…
- GSM8655230 Group 1 WT mice fed a HFD. RNASeq performed at end of study #15 Group 1 WT mice fed a H…
- GSM8655231 Group 1 WT mice fed a HFD. RNASeq performed at end of study #16 Group 1 WT mice fed a H…
- GSM8655232 Group 2 WT mice fed chow. RNASeq performed at end of the study #1 Group 2 WT mice fed cho…
- GSM8655233 Group 2 WT mice fed chow. RNASeq performed at end of the study #2 Group 2 WT mice fed cho…
- GSM8655234 Group 2 WT mice fed chow. RNASeq performed at end of the study #3 Group 2 WT mice fed cho…
- GSM8655235 Group 2 WT mice fed chow. RNASeq performed at end of the study #4 Group 2 WT mice fed cho…
- GSM8655236 Group 2 WT mice fed chow. RNASeq performed at end of the study #5 Group 2 WT mice fed cho…
- GSM8655237 Group 2 WT mice fed chow. RNASeq performed at end of the study #6 Group 2 WT mice fed cho…
- GSM8655238 Group 2 WT mice fed chow. RNASeq performed at end of the study #7 Group 2 WT mice fed cho…
- GSM8655239 Group 2 WT mice fed chow. RNASeq performed at end of the study #8 Group 2 WT mice fed cho…
- GSM8655240 Group 2 WT mice fed chow. RNASeq performed at end of the study #9 Group 2 WT mice fed cho…
- GSM8655241 Group 2 WT mice fed chow. RNASeq performed at end of the study #10 Group 2 WT mice fed cho…
- GSM8655242 Group 2 WT mice fed chow. RNASeq performed at end of the study #11 Group 2 WT mice fed cho…
- GSM8655243 Group 2 WT mice fed chow. RNASeq performed at end of the study #12 Group 2 WT mice fed cho…
- GSM8655244 Group 2 WT mice fed chow. RNASeq performed at end of the study #13 Group 2 WT mice fed cho…
- GSM8655245 Group 2 WT mice fed chow. RNASeq performed at end of the study #14 Group 2 WT mice fed cho…
- GSM8655246 Group 2 WT mice fed chow. RNASeq performed at end of the study #15 Group 2 WT mice fed cho…
- GSM8655247 Group 2 WT mice fed chow. RNASeq performed at end of the study #16 Group 2 WT mice fed cho…
- GSM8655248 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #1 Group 3 Humanized Mgat2…
- GSM8655249 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #2 Group 3 Humanized Mgat2…
- GSM8655250 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #3 Group 3 Humanized Mgat2…
- GSM8655251 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #4 Group 3 Humanized Mgat2…
- GSM8655252 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #5 Group 3 Humanized Mgat2…
- GSM8655253 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #6 Group 3 Humanized Mgat2…
- GSM8655254 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #7 Group 3 Humanized Mgat2…
- GSM8655255 Group 3 Humanized Mgat2 mice fed a HFD. RNASeq performed at the end of the study #8 Group 3 Humanized Mgat2…
+ 24 more — browse all 64 samples with per-sample file links →
- GSE319035 P21+TREM2+-Senescent Macrophages Fuel Inflammaging and Metabolic Dysfunction-Associated Steatotic Liver Disease [NAFLD_time_course] 77 samples shares dysfunction-associated, steatotic
- GSE275176 Transcriptomic alterations associated with the progression of metabolic dysfunction-associated steatotic liver disease in CC042 Collaborative Cross mice. 60 samples shares dysfunction-associated, steatotic
- GSE312316 Maternal Western-Style Diet alters Kupffer Cell proportion leading to Metabolic Dysfunction-Associated Steatotic Liver Disease when challenged with western diet in adulthood 36 samples shares dysfunction-associated, steatotic
- GSE318801 P21+TREM2+-Senescent Macrophages Fuel Inflammaging and Metabolic Dysfunction-Associated Steatotic Liver Disease. 20 samples shares dysfunction-associated, steatotic
- GSE312061 Liver-specific delivery of MDM2 antisense oligonucleotides counteracts diet-induced metabolic dysfunction-associated steatotic liver diseases 18 samples shares dysfunction-associated, steatotic
- GSE291163 Testing the contribution of FGL1 to the pathogenesis of metabolic dysfunction-associated steatotic liver disease and hepatocellular carcinoma 16 samples shares dysfunction-associated, steatotic
- GSE318804 P21+TREM2+-Senescent Macrophages Fuel Inflammaging and Metabolic Dysfunction-Associated Steatotic Liver Disease. [macro_senescence] 12 samples shares dysfunction-associated, steatotic
- GSE318651 P21+TREM2+-Senescent Macrophages Fuel Inflammaging and Metabolic Dysfunction-Associated Steatotic Liver Disease [RNAseq_sgCMPK2] 12 samples shares dysfunction-associated, steatotic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.