Transcriptomic analysis of RNA (mRNA/ lncRNA/ circRNA) expression and epitranscriptomic profiling of N4-acetylcytidine-related RNA (mRNA/ lncRNA/ circRNA) acetylation in renal cortex from mice with ischemia reperfusion injury
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CircAASS alleviates renal injury and fibrosis by regulating mitochondrial homeostasis in tubular epithelial cellsAutophagy · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE286507_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1209825 and SRA study SRP556880. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8728567 Renal cortex, Sham-operated, biol rep 1 input
- GSM8728568 Renal cortex, Sham-operated, biol rep 1 IP
- GSM8728569 Renal cortex, Sham-operated, biol rep 2 input
- GSM8728570 Renal cortex, Sham-operated, biol rep 2 IP
- GSM8728571 Renal cortex, Sham-operated, biol rep 3 input
- GSM8728572 Renal cortex, Sham-operated, biol rep 3 IP
- GSM8728573 Renal cortex, I/R-AKI, biol rep 1 input
- GSM8728574 Renal cortex, I/R-AKI, biol rep 1 IP
- GSM8728575 Renal cortex, I/R-AKI, biol rep 2 input
- GSM8728576 Renal cortex, I/R-AKI, biol rep 2 IP
- GSM8728577 Renal cortex, I/R-AKI, biol rep 3 input
- GSM8728578 Renal cortex, I/R-AKI, biol rep 3 IP
- GSE240702 Integrated Analysis of lncRNA-miRNA-mRNA Interaction Network in Myocardial Ischemia-Reperfusion Injury During Cardiopulmonary Bypass Surgery in Mouse 12 samples shares reperfusion, ischemia, lncrna
- GSE240701 Integrated Analysis of lncRNA-miRNA-mRNA Interaction Network in Myocardial Ischemia-Reperfusion Injury During Cardiopulmonary Bypass Surgery in Mouse [RNA-seq] 6 samples shares reperfusion, ischemia, lncrna
- GSE267650 Mouse kidney ischemia-reperfusion injury time course 57 samples shares reperfusion, ischemia
- GSE294969 Enhanced Expression of the Female-Biased Gene Gsta2 in Male Proximal Tubule Cells Improves Renal Resilience to Ischemia-Reperfusion Injury 30 samples shares reperfusion, ischemia
- GSE246406 Nuclear Acly protects liver from ischemia-reperfusion injury 27 samples shares reperfusion, ischemia
- GSE211951 Pulmonary gene expression after ischemia reperfusion in young and old mice 24 samples shares reperfusion, ischemia
- GSE246302 Double Negative T Cells Downregulate Intrahepatic Inflammation and Ameliorate Hepatic Ischemia and Reperfusion Injury via CD39-adenosinergic axis 20 samples shares reperfusion, ischemia
- GSE252105 Single Cell Chromatin Accessibility Profiling on the mouse kidneys with ischemia-reperfusion injury 19 samples shares reperfusion, ischemia
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.