IL-9 and Blimp-1 protect the transcriptional identity of group 2 innate lymphocytes in allergic asthma [RNA-seq]
RNA-seq (gene expression) · mouse · 14 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 14 samples: 4 × Unstim_mouse vs 4 × Stim_mouse vs 3 × Blimp1_WT, mouse vs 3 × Blimp1_KO, mouseGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- IL-9 and Blimp-1 protects the transcriptional identity of group 2 innate lymphocytes in allergic asthmaResearch square · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE291231_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1232618 and SRA study SRP568331. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 14 samples.
How we read this: 4 replicated groups read from 14 sample titles; they account for 14 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8831264 Blimp1_WT, mouse1 Blimp1_WT, mouse
- GSM8831265 Blimp1_WT, mouse2 Blimp1_WT, mouse
- GSM8831266 Blimp1_WT, mouse3 Blimp1_WT, mouse
- GSM8831267 Blimp1_KO, mouse1 Blimp1_KO, mouse
- GSM8831268 Blimp1_KO, mouse2 Blimp1_KO, mouse
- GSM8831269 Blimp1_KO, mouse3 Blimp1_KO, mouse
- GSM8831270 Unstim_mouse1 Unstim_mouse
- GSM8831271 Unstim_mouse2 Unstim_mouse
- GSM8831272 Unstim_mouse3 Unstim_mouse
- GSM8831273 Unstim_mouse4 Unstim_mouse
- GSM8831274 Stim_mouse1 Stim_mouse
- GSM8831275 Stim_mouse2 Stim_mouse
- GSM8831276 Stim_mouse3 Stim_mouse
- GSM8831277 Stim_mouse4 Stim_mouse
- GSE328307 IL-9 and Blimp-1 protect the transcriptional identity of group 2 innate lymphocytes in allergic asthma 21 samples shares blimp-1, il-9, lymphocytes, identity, allergic, protect, innate
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.