Bulk RNA-Seq of male and female lumbosacral dorsal root ganglia after VEGFA-instillation
RNA-seq (gene expression) · mouse · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples: 4 × Dorsal root ganglia,VEGF,Male vs 4 × Dorsal root ganglia,Saline,Male vs 4 × Dorsal root ganglia,VEGF,Female vs 4 × Dorsal root ganglia,Saline,FemaleGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcriptome profiling suggests molecular sexual dimorphism in lumbosacral dorsal root ganglia and sex-specific mechanisms underlying visceral painPhysiological genomics · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE294967_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1252114 and SRA study SRP579500. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 4 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8933244 Dorsal root ganglia,VEGF,Male 1 Dorsal root ganglia,VEG…
- GSM8933245 Dorsal root ganglia,VEGF,Male 2 Dorsal root ganglia,VEG…
- GSM8933246 Dorsal root ganglia,Saline,Male 3 Dorsal root ganglia,Sal…
- GSM8933247 Dorsal root ganglia,Saline,Male 4 Dorsal root ganglia,Sal…
- GSM8933248 Dorsal root ganglia,VEGF,Female 1 Dorsal root ganglia,VEG…
- GSM8933249 Dorsal root ganglia,VEGF,Female 2 Dorsal root ganglia,VEG…
- GSM8933250 Dorsal root ganglia,Saline,Female 3 Dorsal root ganglia,Sal…
- GSM8933251 Dorsal root ganglia,Saline,Female 4 Dorsal root ganglia,Sal…
- GSM8933252 Dorsal root ganglia,VEGF,Male 5 Dorsal root ganglia,VEG…
- GSM8933253 Dorsal root ganglia,VEGF,Male 6 Dorsal root ganglia,VEG…
- GSM8933254 Dorsal root ganglia,VEGF,Female 5 Dorsal root ganglia,VEG…
- GSM8933255 Dorsal root ganglia,VEGF,Female 6 Dorsal root ganglia,VEG…
- GSM8933256 Dorsal root ganglia,Saline,Female 7 Dorsal root ganglia,Sal…
- GSM8933257 Dorsal root ganglia,Saline,Female 8 Dorsal root ganglia,Sal…
- GSM8933258 Dorsal root ganglia,Saline,Male 7 Dorsal root ganglia,Sal…
- GSM8933259 Dorsal root ganglia,Saline,Male 8 Dorsal root ganglia,Sal…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.