Transposable elements are dynamically expressed within medium spiny neurons and associated with molecular and behavioral adaptations to cocaine [scRNA-seq]
Single-cell RNA-seq · mouse · 3 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transposable Elements Are Dynamically Regulated in Medium Spiny Neurons and May Contribute to the Molecular and Behavioral Adaptations to CocaineBiological psychiatry · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE296548_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1259951 and SRA study SRP583618. Searching any of these in the dataset finder brings you back here.
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+ 3 more — browse all 3 samples with per-sample file links →
- GSE296397 Transposable elements are dynamically expressed within medium spiny neurons and associated with molecular and behavioral adaptations to cocaine 12 samples shares transposable, dynamically, adaptations, behavioral, expressed, elements, neurons
- GSE295250 Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice [RNA-seq] 72 samples shares adaptations, behavioral, elements
- GSE295376 Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice 86 samples shares adaptations, behavioral, elements
- GSE295251 Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice [CUT&Run] 14 samples shares adaptations, behavioral, elements
- GSE208388 Epigenetically-controlled tumor antigens derived from splice junctions between exons and transposable elements [RNA-seq] 105 samples shares transposable, elements
- GSE294558 Derepression of transposable elements in mouse prefrontal cortex disrupts social behavior 74 samples shares transposable, elements
- GSE276453 The function of the ZFP189 transcription factor in the nucleus accumbens facilitates cocaine-specific transcriptional and behavioral adaptations 45 samples shares adaptations, behavioral
- GSE297796 Cartography and mechanism of enhanced transcriptome plasticity by transposable elements 24 samples shares transposable, elements
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.