Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice [RNA-seq]
RNA-seq (gene expression) · mouse · 72 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 72 samples: 64 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Conserved noncoding cis elements associated with hibernation modulate metabolic and behavioral adaptations in miceScience (New York, N.Y.) · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE295250_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1243067 and SRA study SRP573804. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 72 sample titles: 64 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8944231 RNAseq_Fed_E3_WT_1
- GSM8944232 RNAseq_72hFasted_E3_WT_3
- GSM8944233 RNAseq_72hFasted_E3_KO_2
- GSM8944234 RNAseq_72hFasted_E3_KO_3
- GSM8944235 RNAseq_Fed_E3_WT_2
- GSM8944236 RNAseq_Fed_E3_KO_1
- GSM8944237 RNAseq_Fed_E3_KO_2
- GSM8944238 RNAseq_Fed_E3_WT_3
- GSM8944239 RNAseq_Fed_E3_KO_3
- GSM8944240 RNAseq_72hFasted_E3_WT_1
- GSM8944241 RNAseq_72hFasted_E3_KO_1
- GSM8944242 RNAseq_72hFasted_E3_WT_2
- GSM8944243 RNAseq_E4_KO_1_HY
- GSM8944244 RNAseq_E4_KO_2_HY
- GSM8944245 RNAseq_E4_KO_3_HY
- GSM8944246 RNAseq_E4_KO_4_HY
- GSM8944247 RNAseq_E4_WT_1_HY
- GSM8944248 RNAseq_E4_WT_2_HY
- GSM8944249 RNAseq_E4_WT_3_HY
- GSM8944250 RNAseq_E4_WT_4_HY
- GSM8944251 RNAseq_E5_WT1_HYP
- GSM8944252 RNAseq_E5_WT2_HYP
- GSM8944253 RNAseq_E5_WT3_HYP
- GSM8944254 RNAseq_E5_WT4_HYP
- GSM8944255 RNAseq_E5_KO1_HYP
- GSM8944256 RNAseq_E5_KO2_HYP
- GSM8944257 RNAseq_E5_KO3_HYP
- GSM8944258 RNAseq_E5_KO4_HYP
- GSM8944259 RNAseq_E4_WT_196_HYP_72hFasted
- GSM8944260 RNAseq_E4_KO_197_HYP_72hFasted
- GSM8944261 RNAseq_E4_KO_198_HYP_72hFasted
- GSM8944262 RNAseq_E4_KO_199_HYP_72hFasted
- GSM8944263 RNAseq_E4_WT_202_HYP_72hFasted
- GSM8944264 RNAseq_E4_WT_221_72hFasted
- GSM8944265 RNAseq_E4_WT_216_HYP_72hFasted
- GSM8944266 RNAseq_E5_181_WT_72hr_fast
- GSM8944267 RNAseq_E2_204_KO_Fed
- GSM8944268 RNAseq_E2_195_WT_Fed
- GSM8944269 RNAseq_E2_KO_189_KO_Fed
- GSM8944270 RNAseq_E2_KO_190_KO_Fed
+ 32 more — browse all 72 samples with per-sample file links →
- GSE295376 Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice 86 samples shares cis-elements, hibernation, adaptations, behavioral, conserved, noncoding, modulate
- GSE295251 Conserved Noncoding Cis-Elements Associated with Hibernation Modulate Metabolic and Behavioral Adaptations in Mice [CUT&Run] 14 samples shares cis-elements, hibernation, adaptations, behavioral, conserved, noncoding, modulate
- GSE296548 Transposable elements are dynamically expressed within medium spiny neurons and associated with molecular and behavioral adaptations to cocaine [scRNA-seq] 3 samples shares adaptations, behavioral, rna-seq
- GSE276453 The function of the ZFP189 transcription factor in the nucleus accumbens facilitates cocaine-specific transcriptional and behavioral adaptations 45 samples shares adaptations, behavioral
- GSE269326 Nucleus Accumbens MEF2C Mediates the Maintenance of Peripheral Nerve Injury-induced Physiological and Behavioral Maladaptations 24 samples shares adaptations, behavioral
- GSE275510 Deciphering Motor Dysfunction and Microglial Activation in mThy1-α-Synuclein Mice: A Comprehensive Study of Behavioral, Gene Experssion, and Methylation Changes [RNA-Seq] 20 samples shares behavioral, rna-seq
- GSE299912 Chronic periodontitis induces neurobehavioral deficits via microbiota–glia–endocrine interactions [RNA-Seq] 20 samples shares behavioral, rna-seq
- GSE296397 Transposable elements are dynamically expressed within medium spiny neurons and associated with molecular and behavioral adaptations to cocaine 12 samples shares adaptations, behavioral
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.