Synergistic Multiple Effects of Resveratrol Combatting Salmonella Infection
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE303403_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1295358 and SRA study SRP602911. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE278410 Salmonella infection accelerates potential maturation of the intestinal epithelium 32 samples shares salmonella
- GSE317360 The Combination of Remdesivir and Ivermectin Exerts Highly Potent and Synergistic Antiviral Activity Against Murine Coronavirus and SARS-CoV-2 Infections 18 samples shares synergistic
- GSE290763 Salmonella typhimurium targets distal colonocytes to trigger infection [RNA-seq] 15 samples shares salmonella
- GSE279651 scnasRNA-seq resolves in vivo single-cell RNA dynamics of immune cells during Salmonella infection 12 samples shares salmonella
- GSE304820 Laurocapram inhibits Salmonella infection via dual mechanisms 12 samples shares salmonella
- GSE291248 Salmonella typhimurium targets distal colonocytes to trigger infection 10 samples shares salmonella
- GSE233489 scRNA-sequencing of colon and dura CD45+ cells following Salmonella infection 8 samples shares salmonella
- GSE233790 scRNA-seq of TNF receptor-deficient NK cells during Salmonella Typhimurium infection 8 samples shares salmonella
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.