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Experimentally induced myocardial infarction in mice - RNA Sequencing of sham left ventricular tissue and infarct zones

GSE307268 Mus musculus (mouse) RNA-seq (gene expression) 17 samples Submitted 2025/12/17 Platform GPL19057
At a glance

RNA-seq (gene expression) · mouse · 17 samples

What it is
RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
Organism
Mus musculus (mouse)
Samples
17 samples: 9 × heart, infarctzone vs 8 × heart, shGroups are read from the sample names, not from the paper. Check the list below.
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Paper
Systems biology approach uncovers candidates for kidney-heart interorgan crosstalk after myocardial infarctionScientific reports · 2025
Summary (written by the submitters)
To induce myocardial infarction, ligation of left anterior descending (LAD) coronary artery was performed for 5d. After 5d heart tisse was collected from the infarct zone of MI-mice and left ventricular tissue of sham operated mice.
Published in
Systems biology approach uncovers candidates for kidney-heart interorgan crosstalk after myocardial infarction
Wolf H, Kupsch S, Haacke VK et al. · Scientific reports 2025 · PMID 41350805 · doi:10.1038/s41598-025-30712-z
This dataset
Open GSE307268 in finder → Find more mouse RNA-seq datasets →
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓
2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE307268_RAW.tar (it can run to tens of gigabytes).

All supplementary files ↗ Whole study · RAW.tar ↓
3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

Raw reads on ENA ↗

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA1315114 and SRA study SRP617501. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 41350805) ↗
Study design
9 × heart, infarctzone vs 8 × heart, sh

Supports a between-group comparison across 17 samples.

How we read this: 2 replicated groups read from 17 sample titles; they account for 17 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

Samples in this study
Datasets on a similar topic

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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.