Expression profiling of Muscle tissue from (C57BL/6J X C3H/HeJ)F2 mice on ApoE null backgrounds
Expression microarray · mouse · 319 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 319 samples: 319 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE3088_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA93089. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 319 sample titles: 319 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM68368 f2#1 versus pool Mouse muscle tissue
- GSM68369 f2#2 versus pool Mouse muscle tissue
- GSM68370 f2#3 versus pool Mouse muscle tissue
- GSM68371 f2#4 versus pool Mouse muscle tissue
- GSM68372 f2#5 versus pool Mouse muscle tissue
- GSM68373 f2#6 versus pool Mouse muscle tissue
- GSM68374 f2#8 versus pool Mouse muscle tissue
- GSM68375 f2#9 versus pool Mouse muscle tissue
- GSM68376 f2#10 versus pool Mouse muscle tissue
- GSM68377 f2#11 versus pool Mouse muscle tissue
- GSM68378 f2#14 versus pool Mouse muscle tissue
- GSM68379 f2#15 versus pool Mouse muscle tissue
- GSM68380 f2#16 versus pool Mouse muscle tissue
- GSM68381 f2#17 versus pool Mouse muscle tissue
- GSM68382 f2#18 versus pool Mouse muscle tissue
- GSM68383 f2#19 versus pool Mouse muscle tissue
- GSM68384 f2#20 versus pool Mouse muscle tissue
- GSM68385 f2#21 versus pool Mouse muscle tissue
- GSM68386 f2#22 versus pool Mouse muscle tissue
- GSM68387 f2#23 versus pool Mouse muscle tissue
- GSM68388 f2#24 versus pool Mouse muscle tissue
- GSM68389 f2#25 versus pool Mouse muscle tissue
- GSM68390 f2#26 versus pool Mouse Muscle tissue
- GSM68391 f2#27 versus pool Mouse muscle tissue
- GSM68392 f2#28 versus pool Mouse muscle tissue
- GSM68393 f2#29 versus pool Mouse muscle tissue
- GSM68394 f2#30 versus pool Mouse muscle tissue
- GSM68395 f2#31 versus pool Mouse Muscle tissue
- GSM68396 f2#32 versus pool Mouse Muscle tissue
- GSM68397 f2#34 versus pool Mouse muscle tissue
- GSM68398 f2#35 versus pool Mouse muscle tissue
- GSM68399 f2#36 versus pool Mouse muscle tissue
- GSM68400 f2#38 versus pool Mouse muscle tissue
- GSM68401 f2#39 versus pool Mouse muscle tissue
- GSM68402 f2#40 versus pool Mouse muscle tissue
- GSM68403 f2#41 versus pool Mouse muscle tissue
- GSM68404 f2#42 versus pool Mouse muscle tissue
- GSM68405 f2#43 versus pool Mouse muscle tissue
- GSM68406 f2#44 versus pool Mouse muscle tissue
- GSM68407 f2#45 versus pool Mouse muscle tissue
+ 279 more — browse all 319 samples with per-sample file links →
- GSE237747 Transcriptomic profiling across 20 CC-RIX genetic backgrounds with and without high-fat high-sugar (HFHS) diet, and with and without metformin [skeletal muscle] 703 samples shares backgrounds, muscle
- GSE228455 Gene expression profile at single cell level of monocytes sorted from C57BL/6J mouse ear tissue at 3 weeks post Leishmania major infection [scRNA-seq] 218 samples shares c57bl
- GSE330380 The effects of adiponectin knockout on hepatic gene expression in male and female C57BL/6NCrl mice fed ad libitum or undergoing caloric restriction 22 samples shares c57bl
- GSE261792 Effect of Ethoxysanguinarine treatment on gene expression after Angiotensin-II infused C57BL/6 mice 18 samples shares c57bl
- GSE279918 Gene expression profile at single cell level of lungs of adult male and female C57BL/6 mice with andwithout high-fat diet-induced obesity 12 samples shares c57bl
- GSE291439 C57BL6 Substrain Differences in Hippocampal-Dependent Learning and Transcriptome 72 samples shares c57bl
- GSE278980 Single-cell screens identify ADAM12 as a fibroblast checkpoint impeding anti-tumor immunity - RNA-seq of C57BL/6 murine models 32 samples shares c57bl
- GSE302019 Bulk RNA sequencing to investigate transcriptional profiles of lung macrophage subpopulations isolated from wild-type C57BL/6J and Spp1-EGFP knock-in reporter mice subjected to intratracheal administration of bleomycin or PBS. 24 samples shares c57bl
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.