Restoring age-related loss of the lactate receptor GPR81 improves mitochondrial function and mitigates skeletal muscle aging
RNA-seq (gene expression) · mouse · 21 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 21 samples: 7 × Young WT vs 7 × Homozygous LAKI vs 7 × Homozygous LAKI treated with CHBAGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE325224_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1337569. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 7 samples read as cases, 7 as controls.
How we read this: 3 replicated groups read from 21 sample titles; they account for 21 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9598121 Young WT biological replicate 1 Young WT
- GSM9598122 Young WT biological replicate 2 Young WT
- GSM9598123 Young WT biological replicate 3 Young WT
- GSM9598124 Young WT biological replicate 4 Young WT
- GSM9598125 Young WT biological replicate 5 Young WT
- GSM9598126 Young WT biological replicate 6 Young WT
- GSM9598127 Young WT biological replicate 7 Young WT
- GSM9598128 Homozygous LAKI biological replicate 1 Homozygous LAKI
- GSM9598129 Homozygous LAKI biological replicate 2 Homozygous LAKI
- GSM9598130 Homozygous LAKI biological replicate 3 Homozygous LAKI
- GSM9598131 Homozygous LAKI biological replicate 4 Homozygous LAKI
- GSM9598132 Homozygous LAKI biological replicate 5 Homozygous LAKI
- GSM9598133 Homozygous LAKI biological replicate 6 Homozygous LAKI
- GSM9598134 Homozygous LAKI biological replicate 7 Homozygous LAKI
- GSM9598135 Homozygous LAKI treated with CHBA biological replicate 1 Homozygous LAKI treated…
- GSM9598136 Homozygous LAKI treated with CHBA biological replicate 2 Homozygous LAKI treated…
- GSM9598137 Homozygous LAKI treated with CHBA biological replicate 3 Homozygous LAKI treated…
- GSM9598138 Homozygous LAKI treated with CHBA biological replicate 4 Homozygous LAKI treated…
- GSM9598139 Homozygous LAKI treated with CHBA biological replicate 5 Homozygous LAKI treated…
- GSM9598140 Homozygous LAKI treated with CHBA biological replicate 6 Homozygous LAKI treated…
- GSM9598141 Homozygous LAKI treated with CHBA biological replicate 7 Homozygous LAKI treated…
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- GSE325919 Mitochondrial remodeling in skeletal muscle underlies exercise-induced reversal of age-associated functional decline in mice and humans 30 samples shares mitochondrial, skeletal
- GSE186648 Skeletal muscle mRNA expression in 25 mice with or without genetic defects of mitochondrial fatty acid oxidation (Acadl and Acadvl knockout) using RNA sequencing. 25 samples shares mitochondrial, skeletal
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- GSE271791 Intermittent fasting alleviates photoreceptor degeneration and retina inflammation in oxidative stress-induced model of Age-Related Macular Degeneration 12 samples shares age-related, receptor
- GSE316731 Endothelial Cell-specific Activation of NOX1 Drives Obesity and Metabolic Syndrome via Skeletal Muscle Mitochondrial Dysfunction with Novel Genetic Signatures 12 samples shares mitochondrial, skeletal
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.