Transcriptomic analysis of hepatocyte specific Eed knock out compared to wild type mice before and after partial hepatectomy
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE329873_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1461986 and SRA study SRP697281. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9712593 jig4702_S20250818_01
- GSM9712594 jig4702_S20250818_WT2-B
- GSM9712595 jig4702_S20250818_WT3-B
- GSM9712596 jig4702_S20250818_WT4-B
- GSM9712597 jig4702_S20250818_WT5-B
- GSM9712598 jig4702_S20250818_WT1-30h
- GSM9712599 jig4702_S20250818_WT2-40h
- GSM9712600 jig4702_S20250818_WT3-40h
- GSM9712601 jig4702_S20250818_WT4-48h
- GSM9712602 jig4702_S20250818_WT5-48h
- GSM9712603 jig4702_S20250818_EKO7-B
- GSM9712604 jig4702_S20250818_EKO8-B
- GSM9712605 jig4702_S20250818_EKO10-B
- GSM9712606 jig4702_S20250818_EKO11-B
- GSM9712607 jig4702_S20250818_EKO12-B
- GSM9712608 jig4702_S20250818_EKO7-48h
- GSM9712609 jig4702_S20250818_EKO8-48h
- GSM9712610 jig4702_S20250818_EKO10-40h
- GSM9712611 jig4702_S20250818_EKO11-40h
- GSM9712612 jig4702_S20250818_EKO12-30h
- GSE328885 Liver transcriptomic response to partial hepatectomy in intestinal-specific SIRT1 knockout mice 34 samples shares hepatectomy, specific, partial, knock
- GSE267938 Functional optic tract rewiring via subtype- and target-specific axonal regeneration and presynaptic activity enhancement 256 samples shares specific, type
- GSE267936 Functional Optic Tract Rewiring via Subtype- and Target-specific Axonal Regeneration and Presynaptic Activity Enhancement (bulk RNA-Seq) 40 samples shares specific, type
- GSE271670 Identifying specific functional roles for senescence across cell types 32 samples shares specific, type
- GSE301254 Single-nucleus profiling reveals a core disease signature and cell-type-specific vulnerabilities in early Rett syndrome 32 samples shares specific, type
- GSE273271 Cell type-specific dysregulation of gene expression due to Chd8 loss of function during mouse cortical development [scRNA-seq] 32 samples shares specific, type
- GSE306031 Single-Nucleus Transcriptomics Reveals Cell Type-Specific Remodeling and Epilepsy Associated Microglia 31 samples shares specific, type
- GSE293093 RNA Seq of hearts upon hepatocyte-specific overexpression of REV-ERBα in cancer cachexia 29 samples shares hepatocyte, specific
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.