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In Vivo CRISPR Screens Identify SLC1A5 as a Metabolic Checkpoint for Cancer Immunotherapy [ATAC]

GSE335904 Homo sapiens; Mus musculus Genome binding/occupancy profiling by high throughput sequencing 4 samples Submitted 2026/06/23 Platform GPL30172Platform GPL30173
Summary
Tumor cells often evade immune pressure via metabolic reprogramming, yet the key metabolic regulators orchestrating this process remain poorly defined. Here, using in vivo metabolic CRISPR screening under distinct immune pressures, we identified tumor cell–derived solute carrier family 1 member 5 (SLC1A5) as a critical metabolic node that sustains an immunosuppressive tumor microenvironment (TME). SLC1A5-mediated glutamine metabolism in tumor cells modulates CD8 T cell infiltration and effector function, reshaping tumor response to immune checkpoint blockade therapy. Mechanistically, glucose deprivation up-regulated SLC1A5 isoforms in tumor cells, enhancing glutamine uptake and metabolic flux remodeling to reset intracellular metabolic homeostasis. This program suppressed inflammatory tumor cell differentiation characterized by cyclic GMP-AMP synthase–stimulator of interferon genes (cGAS–STING) pathway activation, reducing interferon-β secretion and impairing CD8 immunity. These findings define a glutamine-fueled metabolic program as a critical barrier to tumor immunogenicity, positioning SLC1A5 as a metabolic immune checkpoint with therapeutic relevance.
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Direct links to NCBI, no account and no request form: the whole study as GSE335904_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1479793 and SRA study SRP710734. Searching any of these in the dataset finder brings you back here.

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