The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
RNA-seq (gene expression) · human · 11 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 11 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE38157_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA167741 and SRA study SRP013363. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 11 more — browse all 11 samples with per-sample file links →
- GSE183570 mRNA export factors store nascent transcripts within nuclear speckles as an adaptive response to transient global inhibition of transcription. 28 samples shares transcripts, global
- GSE284174 mRNA export factors store nascent transcripts within nuclear speckles as an adaptive response to transient global inhibition of transcription [SLAM-seq] 18 samples shares transcripts, global
- GSE183571 mRNA export factors store nascent transcripts within nuclear speckles as an adaptive response to transient global inhibition of transcription. 50 samples shares transcripts, global
- GSE289360 PYM1 controls non-canonical EJC occupancy and maintains homeostatic expression of membrance targeted transcripts 29 samples shares transcripts, occupancy
- GSE244630 Global mapping of H3K27ac and RPB1 occupancy upon WNK463 treatment 12 samples shares occupancy, global
- GSE270928 Single-cell sequencing of full-length transcripts and T-cell receptors with automated high-throughput Smart-seq3 [HT SS3] 6415 samples shares transcripts
- GSE75220 4sU metabolic labeled transcripts in 65 YRI LCLs 372 samples shares transcripts
- GSE290313 Differentially expressed transcripts associated with depressive symptoms during pregnancy and postpartum 301 samples shares transcripts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.