RNA methylation-dependent RNA processing controls the speed of the circadian clock
DNA methylation · human · 12 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE48037_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA208737 and SRA study SRP026127. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE270484 Patchseq Data of T1D Donor Islets vs ND Matched Controls 958 samples shares controls
- GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set] 670 samples shares circadian
- GSE279285 Systematic characterization of the composition and dynamics of processing body-associated mRNAs 597 samples shares processing
- GSE279168 Systematic characterization of the composition and dynamics of processing body-associated mRNAs [dataset 1] 458 samples shares processing
- GSE229542 Amplified dosage of the NKX2-1 lineage transcription factor controls its oncogenic role in lung adenocarcinoma 199 samples shares controls
- GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls 192 samples shares controls
- GSE13355 Gene expression data of skin from psoriatic patients and normal controls 180 samples shares controls
- GSE269948 Defective RNA processing and ELOA-mediated transcriptional elongation in reversible cellular senescence suggest aging by transcription 162 samples shares processing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.