Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription

Direct links to NCBI, no account and no request form: the whole study as GSE48759_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 139 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA211259 and SRA study SRP026695. Searching any of these in the dataset finder brings you back here.

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• GSE200114 Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development 70 samples
• GSE284303 Transcription-coupled AID Deamination Damage Depends on ELOF1-associated RNA Polymerase II [ChIP-seq] 68 samples
• GSE289568 Feed-forward regulatory loops by NR5A2 ensure robust gene activation during pre-implantation development [CUT&Tag, CUT&RUN, TIP-seq] 43 samples
• GSE283392 Distinct use of super-enhancer elements controls cell type-specific CD25 transcription and function 25 samples
• GSE333587 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Kidney) 19 samples
• GSE226177 Chromatin landscape alteration uncovers multiple transcriptional circuits during memory CD8+ T cell differentiation 8 samples
• GSE334689 m6Am-seq profiling of macrophage-specific Pcif1 knockout mice during experimental colitis 8 samples
• GSE163012 Loop extrusion by cohesin plays a role in enhancer-activated gene expression early in differentiation 109 samples

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →