Anti-microRNA-21 prevents kidney failure in Alport syndrome by stimulating metabolic pathways
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE62295_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA263791 and SRA study SRP048893. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 20 more — browse all 20 samples with per-sample file links →
- GSE261869 NAD+ prevents chronic kidney disease by activating renal tubular metabolism - bulk RNA-sequencing 32 samples shares prevents, kidney
- GSE266597 ANTXR1/TEM8 Blockade Prevents Heart Failure through Suppression of TGF-β Signaling 23 samples shares prevents, failure
- GSE308235 Effect of renal failure and sex on gene expression in mouse strain 129S1/SvlmJ kidneys 16 samples shares failure, kidney
- GSE293034 Linear ubiquitination prevents lipodystrophy and obesity-associated metabolic syndrome 12 samples shares prevents
- GSE294868 Loss of EGFR prevents the synergistic early-phase impact of obesity-associated metabolic and humoral stress on primary VSMC – stressor synergy, sex-dependence 69 samples shares prevents
- GSE289265 Chromatin Remodelers in Cardiometabolic Heart Failure with Preserved Ejection Fraction 16 samples shares failure
- GSE248299 A ketogenic diet prevents metabolic switching durng time restricted feeding 15 samples shares prevents
- GSE309415 Bile acid receptor Tgr5 prevents macrophage hyperinflammation during bacterial sepsis through metabolic and epigenetic silencing 12 samples shares prevents
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.