GEO series

Robust enumeration of cell subsets from tissue expression profiles (HGU133A)

GSE65134 Homo sapiens Expression profiling by array 7 samples Submitted 2015/03/29 Platform GPL96

Summary

We introduce CIBERSORT, a method for characterizing cell composition of complex tissues from their gene expression profiles. When applied to enumeration of hematopoietic subsets in RNA mixtures from fresh, frozen, and fixed tissues, including solid tumors, CIBERSORT outperformed other methods with respect to noise, unknown mixture content, and closely related cell types. CIBERSORT should enable large-scale analysis of RNA specimens for cellular biomarkers and therapeutic targets (http://cibersort.stanford.edu).

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Direct links to NCBI, no account and no request form: the whole study as GSE65134_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 7 samples.

Whole study · RAW.tar ↓ Series matrix ↓ All supplementary files ↗

Also filed as BioProject PRJNA273242. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 25822800) ↗

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