A survey of human brain transcriptome diversity at the single cell level
Single-cell RNA-seq · human · 466 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 466 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE67835_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA281204 and SRA study SRP057196. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 466 more — browse all 466 samples with per-sample file links →
- GSE256207 Accessible chromatin profiles (ATAC) at single-cell level of human post-mortem brain tissue from the orbitofrontal cortex 92 samples shares brain, level
- GSE254569 Gene expression profiles at single-cell level of human post-mortem brain tissue from the orbitofrontal cortex 92 samples shares brain, level
- GSE256490 Single-cell atlas of the human brain vasculature across development, adulthood and disease (scRNA-Seq) 71 samples shares brain
- GSE290927 Gene expression profile at single cell level of human laryngeal normal, preneoplastic and tumorigenic states 40 samples shares level
- GSE269936 Gene expression profile at single cell level for human metastatic melanoma samples 38 samples shares level
- GSE301365 Single-cell analysis of human iPSC-derived midbrain organoids generated with triphasic Wnt modulation combined with a dynamic bioreactor 30 samples shares brain
- GSE197887 Single-cell RNA sequencing of human forebrain organoids from typical and autism subjects 25 samples shares brain
- GSE227548 Gene expression data at the single cell level of human hamstring, deltoid, supraspinatus muscle; as well as, cultured human muscle fibroadipogenic cells (FAPs) 17 samples shares level
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.