Molecular subtypes of metastatic colorectal cancer are predictive of patient response to chemo and targeted therapies (part 2)
Expression microarray · human · 56 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 56 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE72969_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA295465. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 56 more — browse all 56 samples with per-sample file links →
- GSE289582 Baseline tumor features and peripheral blood immune dynamics that underlie efficacy in MSS metastatic colorectal cancer treated with regorafenib, ipilimumab, and nivolumab [Blood] 115 samples shares metastatic, colorectal
- GSE267010 A consensus molecular subtypes classification strategy for clinical colorectal cancer tissues 104 samples shares colorectal, subtypes
- GSE302273 The evolution and heterogeneity of lethal metastatic bladder cancer subtypes 89 samples shares metastatic, subtypes
- GSE292601 Epithelial interferon-stimulated gene programs modulate chemotherapy sensitivity in colorectal cancer via EPSTI1 62 samples shares colorectal, chemo
- GSE300628 HER2 heterogeneous breast cancer models reveal novel therapeutic targets and subclonal dynamics during evolution to resistance to HER2-targeted therapies 60 samples shares therapies, targeted
- GSE225182 Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer 33 samples shares colorectal, subtypes
- GSE289766 Analysis of the mechanism of acquisition of chemotherapy resistance in colorectal cancer cell lines 27 samples shares colorectal, chemo
- GSE200407 RNA-seq between between FOLFOX chemotherapy sensitivity and insensitivity in colorectal cancer 22 samples shares colorectal, chemo
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.