Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function
Non-coding RNA profiling · mouse · 71 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 71 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE93130_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA360106 and SRA study SRP109830. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 71 more — browse all 71 samples with per-sample file links →
- GSE275035 RNA modifications, alternative splicing and circular RNA landscape in the mouse brain: inosine and beyond 27 samples shares circular, brain
- GSE276182 NF-κB activation in astrocytes critically affects wound regeneration after traumatic brain injury 51 samples shares affects, brain
- GSE63137 Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain 31 samples shares mammalian, brain
- GSE300734 Brg1 defect causes aberrent nucleosome landscape and affects totipotency & pluripotency transcriptional factors binding during embryogenesis [RNA-seq] 25 samples shares affects, causes
- GSE246304 A brain-enriched circular RNA controls excitatory neurotransmission and restricts sensitivity to aversive stimuli 22 samples shares circular, brain
- GSE297843 Brg1 defect causes aberrent nucleosome landscape and affects totipotency & pluripotency transcriptional factors binding during embryogenesis [MNase-Seq] 16 samples shares affects, causes
- GSE276422 NF-κB activation in astrocytes critically affects wound regeneration after traumatic brain injury II 14 samples shares affects, brain
- GSE239361 CHD7 and SOX2 Act in a Common Gene Regulatory Network During Mammalian Semicircular Canal and Cochlear Development (RNA-Seq) 12 samples shares mammalian, circular
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.