ChIP-chip on custom NimbleGen genomic tiling arrays
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 15 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE9774_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA105111. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 15 more — browse all 15 samples with per-sample file links →
- GSE15388 EZH1 and H3K27me3 ChIP-chip data from mouse embryonic stem cells 28 samples shares chip-chip
- GSE11329 Chip-chip from mouse embryonic stem (mES) cells 14 samples shares chip-chip
- GSE20529 Promoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-chip 8 samples shares chip-chip
- GSE20551 ChIP-chip from mouse embryonic stem (mES) cells 7 samples shares chip-chip
- GSE280933 Custom-designed lipid-based nanoparticles efficiently deliver mRNA to reverse the pathogenesis of LAL deficiency in a preclinical model 28 samples shares custom
- GSE43187 Paternally induced transgenerational inheritance of susceptibility to diabetes in mammals (NimbleGen expression) 12 samples shares nimblegen
- GSE249662 guidedNOMe-seq quantifies chromatin states at single allele resolution for hundreds of custom regions in parallel [ChIP-Seq] 6 samples shares custom
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.