RNA sequencing of extracellular vesicles, secreted by young and adult mouse adipocytes
Non-coding RNA profiling · mouse · 12 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × P6 Extracellular vesicles secreted by inguinal adipocytes of mice vs 3 × P56 Extracellular vesicles secreted by inguinal adipocytes of miceGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- MicroRNA Profile of Mouse Adipocyte-Derived Extracellular VesiclesCells · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE193590_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA796791 and SRA study SRP354832. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 6 samples.
How we read this: 2 replicated groups read from 12 sample titles; they account for 6 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5742431 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.1 P6 Extracellular vesicl…
- GSM5742432 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.2 P6 Extracellular vesicl…
- GSM5742433 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.3 P6 Extracellular vesicl…
- GSM5742434 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.1 P56 Extracellular vesic…
- GSM5742435 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.2 P56 Extracellular vesic…
- GSM5742436 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.3 P56 Extracellular vesic…
- GSM5814797 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.1 [miRNA-Seq]
- GSM5814798 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.2 [miRNA-Seq]
- GSM5814799 P6 Extracellular vesicles secreted by inguinal adipocytes of mice.3 [miRNA-Seq]
- GSM5814800 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.1 [miRNA-Seq]
- GSM5814801 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.2 [miRNA-Seq]
- GSM5814802 P56 Extracellular vesicles secreted by inguinal adipocytes of mice.3 [miRNA-Seq]
- GSE333191 Integration of Transcriptional Signatures from Brain Tissue and Plasma Extracellular Vesicles of a Preclinical Tauopathy Mouse Model 16 samples shares extracellular, vesicles
- GSE242731 Class switch recombination regulation by extracellular vesicles mediated intercellular epigenomic signaling 48 samples shares extracellular, vesicles
- GSE293374 An extracellular matrix niche secreted by epithelial cells drives intestinal organoid formation (RNA-seq) 44 samples shares extracellular, secreted
- GSE240538 A bone regenerative strategy based on extracellular vesicles transporting citrate for promoting biomineralization 37 samples shares extracellular, vesicles
- GSE272476 Neutrophils exposed to a cholesterol metabolite secrete extracellular vesicles that promote epithelial-mesenchymal transition and stemness in breast cancer cells [RNA-seq] 30 samples shares extracellular, vesicles
- GSE327752 Human breast milk-derived extracellular vesicles alleviate Alzheimer’s disease phenotypes through delivering CD36 18 samples shares extracellular, vesicles
- GSE243611 Human Brain Small Extracellular Vesicles Contain Selectively-Packaged, Full-Length mRNA 18 samples shares extracellular, vesicles
- GSE297762 Mesenchymal Stem Cell Extracellular Vesicles Ameliorate Radiation-caused Dry Mouth 15 samples shares extracellular, vesicles
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.