RNAseq of 3 and 5 days differentiated C2C12 cells treated with conditioned medium of KPC, 4662, LLC or C26 cells
RNA-seq (gene expression) · mouse · 42 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 42 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Assessing the involvement of tumor-secreted factors in the inhibition of muscle differentiationBiochimica et biophysica acta. Molecular cell research · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE194370_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA800376 and SRA study SRP356666. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run Sample 1 … Sample 42 and carry no group information.
- GSM5834179 Sample 1
- GSM5834180 Sample 2
- GSM5834181 Sample 3
- GSM5834182 Sample 4
- GSM5834183 Sample 5
- GSM5834184 Sample 6
- GSM5834185 Sample 7
- GSM5834186 Sample 8
- GSM5834187 Sample 9
- GSM5834188 Sample 10
- GSM5834189 Sample 11
- GSM5834190 Sample 12
- GSM5834191 Sample 13
- GSM5834192 Sample 14
- GSM5834193 Sample 15
- GSM5834194 Sample 16
- GSM5834195 Sample 17
- GSM5834196 Sample 18
- GSM5834197 Sample 19
- GSM5834198 Sample 20
- GSM5834199 Sample 21
- GSM5834200 Sample 22
- GSM5834201 Sample 23
- GSM5834202 Sample 24
- GSM5834203 Sample 25
- GSM5834204 Sample 26
- GSM5834205 Sample 27
- GSM5834206 Sample 28
- GSM5834207 Sample 29
- GSM5834208 Sample 30
- GSM5834209 Sample 31
- GSM5834210 Sample 32
- GSM5834211 Sample 33
- GSM5834212 Sample 34
- GSM5834213 Sample 35
- GSM5834214 Sample 36
- GSM5834215 Sample 37
- GSM5834216 Sample 38
- GSM5834217 Sample 39
- GSM5834218 Sample 40
+ 2 more — browse all 42 samples with per-sample file links →
- GSE249627 RNA sequencing of mouse myoblast cells C2C12 with and without lenvatinib treated after 4 days differentiated. 6 samples shares c2c12, differentiated, treated
- GSE333910 Transcriptomic profiling of C2C12 myotubes treated with D-galactose and red ginseng-derived interventions 30 samples shares c2c12, treated
- GSE316686 Total RNA-seq of C2C12 myotubes treated with agrin or MuSK antibodies 20 samples shares c2c12, treated
- GSE254885 Transcriptome profile of C2C12 wild-type and Fam134b knockout myoblasts and differentiated myotubes 16 samples shares c2c12, differentiated
- GSE216552 RNA sequencing analysis of wild-type and ITF2357 or I-BET151 or JQ1 treated mouse pancreatic cancer KPC cells 12 samples shares kpc, treated
- GSE217125 Expression analysis of C2C12 cells treated with scramble siRNA or siRNA directed against Fndc1 10 samples shares c2c12, treated
- GSE294869 The effect of carnitine treatment on palmitic acid-treated C2C12 myotubes 9 samples shares c2c12, treated
- GSE261984 Effect of a 24h corticosterone treatment on differentiated C2C12 myotubes 6 samples shares c2c12, differentiated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.