The transcriptional network for mesenchymal transformation of brain tumours
Expression microarray · mouse · 108 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 108 samples: 108 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE20281_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA125431. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 108 sample titles: 108 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM473728 4457278015_C
- GSM473729 4457278015_D
- GSM473730 4457278015_E
- GSM473731 4457278015_F
- GSM473732 4457278021_A
- GSM473733 4457278021_B
- GSM473734 4457278021_C
- GSM473735 4457278021_D
- GSM473736 4457278021_E
- GSM473737 4457278021_F
- GSM473738 4427941023_A
- GSM473739 4427941023_B
- GSM473740 4427941023_C
- GSM473741 4427941023_D
- GSM473742 4427941023_E
- GSM473743 4427941023_F
- GSM473744 4457278014_A
- GSM473745 4457278014_B
- GSM473746 4457278014_C
- GSM473747 4457278014_D
- GSM473748 4457278014_E
- GSM473749 4457278014_F
- GSM473750 4457278013_A
- GSM473751 4457278013_B
- GSM473752 4457278013_C
- GSM473753 4457278013_D
- GSM473754 4457278013_E
- GSM473755 4457278013_F
- GSM473756 4457278023_A
- GSM473757 4457278023_B
- GSM473758 4457278023_C
- GSM473759 4457278023_D
- GSM473760 4457278023_E
- GSM473761 4457278023_F
- GSM473762 4455416129_A
- GSM473763 4455416129_B
- GSM473764 4455416129_C
- GSM473765 4455416129_D
- GSM473766 4455416129_E
- GSM473767 4455416129_F
+ 68 more — browse all 108 samples with per-sample file links →
- GSE240030 ATRX guards against aberrant differentiation in mesenchymal progenitor cells 165 samples shares mesenchymal
- GSE318680 mRNA 3ʹ UTRs direct microRNA degradation to participate in imprinted gene networks and regulate growth 129 samples shares network
- GSE261742 Identification of epigenetic regulators of fibrotic transformation in cardiac fibroblasts through bulk and single-cell CRISPR screens 69 samples shares transformation
- GSE45982 EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation 61 samples shares transformation
- GSE245030 CPSF6-RARγ Interacts with HDAC3 to Promote Myeloid Transformation 57 samples shares transformation
- GSE297013 Transcriptomic and Epigenomic Profiling of MYADM and RhoA Regulatory Networks in Metastatic Cancer Models 52 samples shares network
- GSE293412 TWIST1 drives endothelial-to-mesenchymal-transition to stabilize atherosclerotic plaques 29 samples shares mesenchymal
- GSE298706 Human microglia reduce alpha-synuclein aggregation and are neuroprotective in adult mouse brain 24 samples shares brain
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.