High-throughput sequencing of mRNA from oocyte, 1 cell, 16/32 cells, 128/256 cells, 3.5hpf and 5.3hpf zebrafish embryos (Wild type; AB line)

Direct links to NCBI, no account and no request form: the whole study as GSE22830_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA127881 and SRA study SRP003165. Searching any of these in the dataset finder brings you back here.

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+ 6 more — browse all 6 samples with per-sample file links →

• GSE106466 Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage 416 samples
• GSE106474 Drop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints) 28 samples
• GSE111882 RNAseq of wild type zebrafish germline (ovary, oocyte, testis) 6 samples
• GSE224113 A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [SLAM-seq] 4 samples
• GSE112824 10x analysis of wild-type (TLAB) and MZoep zebrafish embryos at 6-somite stage 2 samples
• GSE162415 Temporal transcriptome in Pou5f3, Nanog and Sox19b mutant zebrafish embryos 232 samples
• GSE147112 Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition 114 samples
• GSE137424 Temporal transcriptome in Pou5f3 and Sox19b mutant zebrafish embryos 101 samples

Search all RNA-seq datasets in GEO →