lncRNAs differentially expressed in benign and malignant phyllodes tumors [array]
Non-coding RNA profiling · human · 16 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 6 × benign phyllodes tumor vs 6 × malignant phyllodes tumor vs 4 × fibroadenomaGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE235267_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA985635. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 3 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7498110 fibroadenoma_rep1 fibroadenoma
- GSM7498111 fibroadenoma_rep2 fibroadenoma
- GSM7498112 fibroadenoma_rep3 fibroadenoma
- GSM7498113 fibroadenoma_rep4 fibroadenoma
- GSM7498114 benign phyllodes tumor_rep1 benign phyllodes tumor
- GSM7498115 benign phyllodes tumor_rep2 benign phyllodes tumor
- GSM7498116 benign phyllodes tumor_rep3 benign phyllodes tumor
- GSM7498117 benign phyllodes tumor_rep4 benign phyllodes tumor
- GSM7498118 benign phyllodes tumor_rep5 benign phyllodes tumor
- GSM7498119 benign phyllodes tumor_rep6 benign phyllodes tumor
- GSM7498120 malignant phyllodes tumor_rep1 malignant phyllodes tum…
- GSM7498121 malignant phyllodes tumor_rep2 malignant phyllodes tum…
- GSM7498122 malignant phyllodes tumor_rep3 malignant phyllodes tum…
- GSM7498123 malignant phyllodes tumor_rep4 malignant phyllodes tum…
- GSM7498124 malignant phyllodes tumor_rep5 malignant phyllodes tum…
- GSM7498125 malignant phyllodes tumor_rep6 malignant phyllodes tum…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.