Retrospective analysis reveals the early origin and development of pulmonary perivascular cells
DNA methylation · mouse · 37 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Mus musculus (mouse)
- Samples
- 37 samples: 37 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Retrospective Analysis Reveals the Early Origin and Development of Pulmonary Perivascular CellsAmerican journal of respiratory cell and molecular biology · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268414_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA1117056 and SRA study SRP510153. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 37 sample titles: 37 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8290870 Endothelial cells control A
- GSM8290871 Endothelial cells control B
- GSM8290872 Endothelial cells control C
- GSM8290873 Endothelial cells E8.5-10.5 A
- GSM8290874 Endothelial cells E8.5-10.5 B
- GSM8290875 Endothelial cells E8.5-10.5 C
- GSM8290876 Endothelial cells E10.5-12.5 A
- GSM8290877 Endothelial cells E10.5-12.5 B
- GSM8290878 Endothelial cells E10.5-12.5 C
- GSM8290879 Endothelial cells E12.5-14.5 A
- GSM8290880 Endothelial cells E12.5-14.5 B
- GSM8290881 Endothelial cells E12.5-14.5 C
- GSM8290882 Endothelial cells E14.5-16.5 A
- GSM8290883 Endothelial cells E14.5-16.5 B
- GSM8290884 Endothelial cells E14.5-16.5 C
- GSM8290885 Perivascular cells control A
- GSM8290886 Perivascular cells control B
- GSM8290887 Perivascular cells control C
- GSM8290888 Perivascular cells E8.5-10.5 A
- GSM8290889 Perivascular cells E8.5-10.5 B
- GSM8290890 Perivascular cells E8.5-10.5 C
- GSM8290891 Perivascular cells E10.5-12.5 A
- GSM8290892 Perivascular cells E10.5-12.5 B
- GSM8290893 Perivascular cells E10.5-12.5 C
- GSM8290894 Perivascular cells E12.5-14.5 A
- GSM8290895 Perivascular cells E12.5-14.5 B
- GSM8290896 Perivascular cells E12.5-14.5 C
- GSM8290897 Perivascular cells E14.5-16.5 A
- GSM8290898 Perivascular cells E14.5-16.5 B
- GSM8290899 Perivascular cells E14.5-16.5 C
- GSM8290900 Lung E10.5 A
- GSM8290901 Lung E10.5 B
- GSM8290902 Lung E12.5 A
- GSM8290903 Lung E12.5 B
- GSM8290904 Lung E14.5
- GSM8290905 Lung E16.5
- GSM8290906 Lung E18.5
- GSE190762 Reversibility of long-term changes to pulmonary function post early life respiratory viral infection 144 samples shares pulmonary, early
- GSE280388 Increased pulmonary blood flow leads to alveolar dysplasia at early postnatal developmental stage 10 samples shares pulmonary, early
- GSE309960 Accessible chromatin profile of early life and adult origin B cell populations 26 samples shares origin, early
- GSE229916 Pericytes and perivascular fibroblasts contribute to central nervous system fibrosis in a region dependent manner 832 samples shares perivascular
- GSE241206 Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity 105 samples shares perivascular
- GSE272588 Multipotent progenitors with distinct origins, clonal lineage fates, transcriptomes, and surface markers yield two hematopoietic trees 605 samples shares origin
- GSE160519 Vascular and perivascular cell profiling reveals the molecular and cellular bases of blood-brain barrier heterogeneity [scRNA-Seq] 52 samples shares perivascular
- GSE233983 Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter 44 samples shares origin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.