RNA-seq of gubernaculum and testis from wild-type, cetacean INSL3 knock-in, and INSL3 knockout mice across developmental stages
RNA-seq (gene expression) · mouse · 39 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 39 samples: 13 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Evolutionary relaxation and functional change of INSL3 and RXFP2 may underlie natural cryptorchidism in mammalsEMBO reports · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE305702_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1307492 and SRA study SRP610010. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 39 samples.
How we read this: 13 replicated groups read from 39 sample titles; they account for 39 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9181948 WT_P8_gubernaculum_biol_rep1 WT_P8_gubernaculum_biol
- GSM9181949 WT_P8_gubernaculum_biol_rep2 WT_P8_gubernaculum_biol
- GSM9181950 WT_P8_gubernaculum_biol_rep3 WT_P8_gubernaculum_biol
- GSM9181951 KI_P8_gubernaculum_biol_rep1 KI_P8_gubernaculum_biol
- GSM9181952 KI_P8_gubernaculum_biol_rep2 KI_P8_gubernaculum_biol
- GSM9181953 KI_P8_gubernaculum_biol_rep3 KI_P8_gubernaculum_biol
- GSM9181954 KO_P8_gubernaculum_biol_rep1 KO_P8_gubernaculum_biol
- GSM9181955 KO_P8_gubernaculum_biol_rep2 KO_P8_gubernaculum_biol
- GSM9181956 KO_P8_gubernaculum_biol_rep3 KO_P8_gubernaculum_biol
- GSM9181957 WT_P23_gubernaculum_biol_rep1 WT_P23_gubernaculum_biol
- GSM9181958 WT_P23_gubernaculum_biol_rep2 WT_P23_gubernaculum_biol
- GSM9181959 WT_P23_gubernaculum_biol_rep3 WT_P23_gubernaculum_biol
- GSM9181960 KI_P23_gubernaculum_biol_rep1 KI_P23_gubernaculum_biol
- GSM9181961 KI_P23_gubernaculum_biol_rep2 KI_P23_gubernaculum_biol
- GSM9181962 KI_P23_gubernaculum_biol_rep3 KI_P23_gubernaculum_biol
- GSM9181963 WT_P8_testis_biol_rep1 WT_P8_testis_biol
- GSM9181964 WT_P8_testis_biol_rep2 WT_P8_testis_biol
- GSM9181965 WT_P8_testis_biol_rep3 WT_P8_testis_biol
- GSM9181966 KI_P8_testis_biol_rep1 KI_P8_testis_biol
- GSM9181967 KI_P8_testis_biol_rep2 KI_P8_testis_biol
- GSM9181968 KI_P8_testis_biol_rep3 KI_P8_testis_biol
- GSM9181969 KO_P8_testis_biol_rep1 KO_P8_testis_biol
- GSM9181970 KO_P8_testis_biol_rep2 KO_P8_testis_biol
- GSM9181971 KO_P8_testis_biol_rep3 KO_P8_testis_biol
- GSM9181972 WT_P23_testis_biol_rep1 WT_P23_testis_biol
- GSM9181973 WT_P23_testis_biol_rep2 WT_P23_testis_biol
- GSM9181974 WT_P23_testis_biol_rep3 WT_P23_testis_biol
- GSM9181975 KI_P23_testis_biol_rep1 KI_P23_testis_biol
- GSM9181976 KI_P23_testis_biol_rep2 KI_P23_testis_biol
- GSM9181977 KI_P23_testis_biol_rep3 KI_P23_testis_biol
- GSM9181978 KO_P23_testis_biol_rep1 KO_P23_testis_biol
- GSM9181979 KO_P23_testis_biol_rep2 KO_P23_testis_biol
- GSM9181980 KO_P23_testis_biol_rep3 KO_P23_testis_biol
- GSM9181981 WT_P40_testis_biol_rep1 WT_P40_testis_biol
- GSM9181982 WT_P40_testis_biol_rep2 WT_P40_testis_biol
- GSM9181983 WT_P40_testis_biol_rep3 WT_P40_testis_biol
- GSM9181984 KI_P40_testis_biol_rep1 KI_P40_testis_biol
- GSM9181985 KI_P40_testis_biol_rep2 KI_P40_testis_biol
- GSM9181986 KI_P40_testis_biol_rep3 KI_P40_testis_biol
- GSE263080 RNA-sea of Smad4 wild-type or Smad4 knockout KPC PDAC organoids from monocultures or co-cultures with pancreatic stellate cells and RNA-seq of flow-sorted PSCs from the same co-cultures. 44 samples shares wild-type, knockout, rna-seq
- GSE263081 RNA-sea of Smad4 wild-type or Smad4 knockout KvPC PDAC organoids from monocultures or co-cultures with pancreatic stellate cells and RNA-seq of flow-sorted PSCs from the same co-cultures. 35 samples shares wild-type, knockout, rna-seq
- GSE262879 Single-cell RNA-sequencing of murine pancreatic tumors derived from the orthotopic transplantation of Smad4 wild-type (WT) or Smad4 knockout (KO) pancreatic ductal adenocarcinoma (PDAC) KPC organoids in nu/nu mice. 18 samples shares wild-type, knockout, rna-seq
- GSE312324 RNA-sequencing analysis of wild-type, Lao1 knockout and Lao1/Il4i1 double knockout mice under normal and DSS-treated conditions 18 samples shares wild-type, knockout, rna-seq
- GSE277692 RNA-sequencing of inguinal white adipose tissue (iWAT) from kynurenine 3-monooxygenase (Kmo) knockout mice and wild-type littermates on chow and high-fat diets. 16 samples shares wild-type, knockout, rna-seq
- GSE326751 RNA-seq of mouse suprarenal aorta from VAMP8-knockout and wild-type mice with AngII or saline infusion 16 samples shares wild-type, knockout, rna-seq
- GSE318357 Bulk liver mRNA-seq of Cep72 knockout and wild-type mice in Schistosoma japonicum infection–induced and CCl4-induced liver fibrosis models 12 samples shares wild-type, knockout, rna-seq
- GSE262878 Single-cell RNA-sequencing of murine pancreatic tumors derived from the orthotopic transplantation of Smad4 wild-type (WT) or Smad4 knockout (KO) pancreatic ductal adenocarcinoma (PDAC) KvPC organoids in nu/nu mice 8 samples shares wild-type, knockout, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.