TET1 non-catalytic activity shapes the chromatin-landscape that directs de novo methylation establishment in the male germline [CUTandRUN]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 18 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- TET1 noncatalytic activity shapes the chromatin landscape associated with de novo methylation establishment in the male germlineGenes & development · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE318253_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1416984 and SRA study SRP672367. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE318256 TET1 non-catalytic activity shapes the chromatin-landscape that directs de novo methylation establishment in the male germline 44 samples shares tet1, chromatin-landscape, non-catalytic, establishment, methylation, activity, germline
- GSE318254 TET1 non-catalytic activity shapes the chromatin-landscape that directs de novo methylation establishment in the male germline [RNAseq] 8 samples shares tet1, chromatin-landscape, non-catalytic, establishment, methylation, activity, germline
- GSE24843 Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity 32 samples shares tet1, methylation
- GSE24841 Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data) 17 samples shares tet1, methylation
- GSE24842 Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (Affymetrix gene expression data) 15 samples shares tet1, methylation
- GSE271376 TET1 Displays Catalytic and Non-catalytic Functions in the Adult Mouse Cortex [RNA-seq] 12 samples shares tet1, non-catalytic
- GSE264193 H3K27 dimethylation dynamics reveal stepwise establishment of facultative heterochromatin in early mouse embryos [ChIP-seq] 57 samples shares establishment, methylation
- GSE249659 Differential CpG methylation at Nnat in the early establishment of beta cell heterogeneity 11 samples shares establishment, methylation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.